NM_005506.4(SCARB2):c.816C>G (p.Asp272Glu) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 14, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002418952.2

Allele description [Variation Report for NM_005506.4(SCARB2):c.816C>G (p.Asp272Glu)]

NM_005506.4(SCARB2):c.816C>G (p.Asp272Glu)

Gene:

SCARB2:scavenger receptor class B member 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4q21.1

Genomic location:

Preferred name:

NM_005506.4(SCARB2):c.816C>G (p.Asp272Glu)

HGVS:

NC_000004.12:g.76175799G>C
NG_012054.1:g.43084C>G
NM_001204255.2:c.387C>G
NM_005506.4:c.816C>GMANE SELECT
NP_001191184.1:p.Asp129Glu
NP_005497.1:p.Asp272Glu
NC_000004.11:g.77096952G>C
NM_005506.3:c.816C>G
NM_005506.4:c.816C>G

Protein change:

D129E

Links:

dbSNP: rs370666555

NCBI 1000 Genomes Browser:

rs370666555

Molecular consequence:

NM_001204255.2:c.387C>G - missense variant - [Sequence Ontology: SO:0001583]
NM_005506.4:c.816C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002680430	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 14, 2017)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002680430

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 14, 2017)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002680430.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.D272E variant (also known as c.816C>G), located in coding exon 6 of the SCARB2 gene, results from a C to G substitution at nucleotide position 816. The aspartic acid at codon 272 is replaced by glutamic acid, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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