NM_000059.4(BRCA2):c.5217_5224del AND Pancreatic cancer, susceptibility to, 2

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Oct 10, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002294005.8

Allele description [Variation Report for NM_000059.4(BRCA2):c.5217_5224del]

NM_000059.4(BRCA2):c.5217_5224del

Gene:

BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_000059.4(BRCA2):c.5217_5224del

Other names:

5445del8; p.Tyr1739*

HGVS:

NC_000013.11:g.32339572_32339579del
NG_012772.3:g.29093_29100del
NM_000059.4:c.5217_5224delTTTAAGTA
LRG_293t1:c.5217_5224del
LRG_293:g.29093_29100del
LRG_293p1:p.Tyr1739_Asn1742delinsTer
NC_000013.10:g.32913707_32913714del
NC_000013.10:g.32913709_32913716del
NM_000059.3:c.5217_5224delTTTAAGTA
NM_000059.4:c.5217_5224delMANE SELECT
U43746.1:n.5445_5452delTTTAAGTA

Links:

Breast Cancer Information Core (BIC) (BRCA2): 5445&base_change=del TTTAAGTA; dbSNP: rs80359497

NCBI 1000 Genomes Browser:

rs80359497

Condition(s)

Name:: Pancreatic cancer, susceptibility to, 2
Synonyms:: Pancreatic cancer 2
Identifiers:: MONDO: MONDO:0013235; MedGen: C3150546; Orphanet: 1333; OMIM: 613347

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002587088	Institute of Human Genetics, University of Leipzig Medical Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Oct 10, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002587088

Institute of Human Genetics, University of Leipzig Medical Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Oct 10, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute of Human Genetics, University of Leipzig Medical Center, SCV002587088.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

_x000D_ Criteria applied: PVS1, PS4_MOD, PM2_SUP

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 24, 2024

ClinVar

Relating variation to medicine