NM_001083603.3(PTCH1):c.70_76del (p.Gly24fs) AND Gorlin syndrome

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Apr 1, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002288442.9

Allele description [Variation Report for NM_001083603.3(PTCH1):c.70_76del (p.Gly24fs)]

NM_001083603.3(PTCH1):c.70_76del (p.Gly24fs)

Gene:

PTCH1:patched 1 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

9q22.32

Genomic location:

Preferred name:

NM_001083603.3(PTCH1):c.70_76del (p.Gly24fs)

HGVS:

NC_000009.12:g.95516745_95516751del
NG_007664.1:g.5215_5221del
NM_001083602.3:c.-280_-274del
NM_001083603.3:c.70_76del
NM_001354919.2:c.-280_-274del
NP_001077072.1:p.Gly24fs
LRG_515t2:c.-280_-274del
LRG_515:g.5215_5221del
NC_000009.11:g.98279027_98279033del
NM_001083602.1:c.-280_-274delGGCCCAG

Protein change:

G24fs

Molecular consequence:

NM_001083602.3:c.-280_-274del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354919.2:c.-280_-274del - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001083603.3:c.70_76del - frameshift variant - [Sequence Ontology: SO:0001589]

Observations:

Condition(s)

Name:: Gorlin syndrome
Synonyms:: Basal cell nevus syndrome
Identifiers:: MONDO: MONDO:0007187; MedGen: C0004779; Orphanet: 377; OMIM: PS109400

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002580813	MGZ Medical Genetics Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Apr 1, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002580813

MGZ Medical Genetics Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Apr 1, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From MGZ Medical Genetics Center, SCV002580813.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Dec 7, 2024

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