NM_001099922.3(ALG13):c.473C>G (p.Ser158Ter) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 22, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002269456.2

Allele description [Variation Report for NM_001099922.3(ALG13):c.473C>G (p.Ser158Ter)]

NM_001099922.3(ALG13):c.473C>G (p.Ser158Ter)

Gene:

ALG13:ALG13 UDP-N-acetylglucosaminyltransferase subunit [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq23

Genomic location:

Preferred name:

NM_001099922.3(ALG13):c.473C>G (p.Ser158Ter)

HGVS:

NC_000023.11:g.111708116C>G
NG_016238.1:g.31999C>G
NM_001099922.3:c.473C>GMANE SELECT
NM_001257230.2:c.161C>G
NM_001257231.2:c.239C>G
NM_001257234.2:c.161C>G
NM_001257237.2:c.161C>G
NM_001324292.2:c.473C>G
NM_001324293.1:c.161C>G
NP_001093392.1:p.Ser158Ter
NP_001244159.1:p.Ser54Ter
NP_001244160.1:p.Ser80Ter
NP_001244163.1:p.Ser54Ter
NP_001244166.1:p.Ser54Ter
NP_001311221.1:p.Ser158Ter
NP_001311222.1:p.Ser54Ter
NC_000023.10:g.110951344C>G
NM_001099922.2:c.473C>G
NR_148693.2:n.522C>G

Protein change:

S158*

Links:

dbSNP: rs2147996566

NCBI 1000 Genomes Browser:

rs2147996566

Molecular consequence:

NR_148693.2:n.522C>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NM_001099922.3:c.473C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001257230.2:c.161C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001257231.2:c.239C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001257234.2:c.161C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001257237.2:c.161C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001324292.2:c.473C>G - nonsense - [Sequence Ontology: SO:0001587]
NM_001324293.1:c.161C>G - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002552681	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Jan 22, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002552681

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Jan 22, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV002552681.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is not a known mechanism of disease; Has not been previously published as pathogenic or benign to our knowledge

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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