NM_001875.5(CPS1):c.2623A>G (p.Lys875Glu) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: May 3, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002265906.1

Allele description [Variation Report for NM_001875.5(CPS1):c.2623A>G (p.Lys875Glu)]

NM_001875.5(CPS1):c.2623A>G (p.Lys875Glu)

Gene:

CPS1:carbamoyl-phosphate synthase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q34

Genomic location:

Preferred name:

NM_001875.5(CPS1):c.2623A>G (p.Lys875Glu)

HGVS:

NC_000002.12:g.210616477A>G
NG_008285.1:g.143793A>G
NM_001122633.3:c.2623A>G
NM_001369256.1:c.2656A>G
NM_001369257.1:c.2623A>G
NM_001875.5:c.2623A>GMANE SELECT
NP_001116105.2:p.Lys875Glu
NP_001356185.1:p.Lys886Glu
NP_001356186.1:p.Lys875Glu
NP_001866.2:p.Lys875Glu
LRG_336t1:c.2623A>G
LRG_336:g.143793A>G
NC_000002.11:g.211481201A>G
NM_001875.4:c.2623A>G
NR_161225.1:n.3532A>G
NR_163592.1:n.1779A>G

Protein change:

K875E

Links:

dbSNP: rs147062907

NCBI 1000 Genomes Browser:

rs147062907

Molecular consequence:

NM_001122633.3:c.2623A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001369256.1:c.2656A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001369257.1:c.2623A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001875.5:c.2623A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_161225.1:n.3532A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_163592.1:n.1779A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002548215	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Likely benign (May 3, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002548215

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Likely benign
(May 3, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV002548215.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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