NM_173483.4(CYP4F22):c.1559T>C (p.Leu520Pro) AND Autosomal recessive congenital ichthyosis 5

Germline classification:: Likely pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002262186.3

Allele description [Variation Report for NM_173483.4(CYP4F22):c.1559T>C (p.Leu520Pro)]

NM_173483.4(CYP4F22):c.1559T>C (p.Leu520Pro)

Gene:

CYP4F22:cytochrome P450 family 4 subfamily F member 22 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19p13.12

Genomic location:

Preferred name:

NM_173483.4(CYP4F22):c.1559T>C (p.Leu520Pro)

HGVS:

NC_000019.10:g.15551434T>C
NG_007987.1:g.47910T>C
NM_173483.4:c.1559T>CMANE SELECT
NP_775754.2:p.Leu520Pro
NC_000019.9:g.15662245T>C

Protein change:

L520P

Links:

dbSNP: rs1297078466

NCBI 1000 Genomes Browser:

rs1297078466

Molecular consequence:

NM_173483.4:c.1559T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Autosomal recessive congenital ichthyosis 5 (ARCI5)
Synonyms:: Lamellar ichthyosis, type 3; Ichthyosis congenita III; Ichthyosis, nonlamellar and nonerythrodermic, congenital, autosomal recessive
Identifiers:: Gene: 50992; MONDO: MONDO:0011485; MedGen: C1858133; Orphanet: 313; OMIM: 604777

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002543815	Suma Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic	inherited	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002543815

Suma Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic

inherited

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	inherited	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Suma Genomics, SCV002543815.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	inherited	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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