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NM_018238.4(AGK):c.424-3dup AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Nov 25, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002063732.14

Allele description [Variation Report for NM_018238.4(AGK):c.424-3dup]

NM_018238.4(AGK):c.424-3dup

Gene:
AGK:acylglycerol kinase [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
7q34
Genomic location:
Preferred name:
NM_018238.4(AGK):c.424-3dup
HGVS:
  • NC_000007.14:g.141615468dup
  • NG_032079.1:g.69191dup
  • NM_001364948.3:c.424-3dup
  • NM_018238.4:c.424-3dupMANE SELECT
  • LRG_1251t1:c.424-3dup
  • LRG_1251:g.69191dup
  • NC_000007.13:g.141315260_141315261insC
  • NC_000007.13:g.141315268dup
  • NM_018238.3:c.424-3dupC
Links:
dbSNP: rs201762775
NCBI 1000 Genomes Browser:
rs201762775
Molecular consequence:
  • NM_001364948.3:c.424-3dup - intron variant - [Sequence Ontology: SO:0001627]
  • NM_018238.4:c.424-3dup - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Sengers syndrome
Synonyms:
Cardiomyopathy and cataract; MITOCHONDRIAL DNA DEPLETION SYNDROME 10 (CARDIOMYOPATHIC TYPE)
Identifiers:
MONDO: MONDO:0008922; MedGen: C1859317; Orphanet: 1369; OMIM: 212350
Name:
Cataract 38
Synonyms:
Cataract, autosomal recessive congenital 5; Cataract 38, autosomal recessive
Identifiers:
MONDO: MONDO:0013859; MedGen: C3553494; Orphanet: 91492; OMIM: 614691

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002341909Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Nov 25, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002341909.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024