NM_006361.6(HOXB13):c.461C>T (p.Ala154Val) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 17, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001800404.1

Allele description [Variation Report for NM_006361.6(HOXB13):c.461C>T (p.Ala154Val)]

NM_006361.6(HOXB13):c.461C>T (p.Ala154Val)

Gene:

HOXB13:homeobox B13 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q21.32

Genomic location:

Preferred name:

NM_006361.6(HOXB13):c.461C>T (p.Ala154Val)

Other names:

p.A154V:GCT>GTT

HGVS:

NC_000017.11:g.48728133G>A
NG_033789.1:g.5617C>T
NM_006361.6:c.461C>TMANE SELECT
NP_006352.2:p.Ala154Val
NP_006352.2:p.Ala154Val
LRG_771t1:c.461C>T
LRG_771:g.5617C>T
LRG_771p1:p.Ala154Val
NC_000017.10:g.46805495G>A
NM_006361.5:c.461C>T

Protein change:

A154V

Links:

dbSNP: rs587780163

NCBI 1000 Genomes Browser:

rs587780163

Molecular consequence:

NM_006361.6:c.461C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002047097	Quest Diagnostics Nichols Institute San Juan Capistrano	criteria provided, single submitter (Quest Diagnostics criteria)	Uncertain significance (May 17, 2021)	unknown	clinical testing	PubMed (2) [See all records that cite these PMIDs] 28272408, 26467025

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002047097

Quest Diagnostics Nichols Institute San Juan Capistrano

criteria provided, single submitter

(Quest Diagnostics criteria)

Uncertain significance
(May 17, 2021)

unknown

clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Computational Modeling of complete HOXB13 protein for predicting the functional effect of SNPs and the associated role in hereditary prostate cancer.

Chandrasekaran G, Hwang EC, Kang TW, Kwon DD, Park K, Lee JJ, Lakshmanan VK.

Sci Rep. 2017 Mar 8;7:43830. doi: 10.1038/srep43830.

PubMed [citation]

PMID:: 28272408
PMCID:: PMC5363706

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV002047097.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (2)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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