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NM_001257180.2(SLC20A2):c.1897G>T (p.Ala633Ser) AND Idiopathic basal ganglia calcification 1

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 9, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001784094.1

Allele description [Variation Report for NM_001257180.2(SLC20A2):c.1897G>T (p.Ala633Ser)]

NM_001257180.2(SLC20A2):c.1897G>T (p.Ala633Ser)

Gene:
SLC20A2:solute carrier family 20 member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8p11.21
Genomic location:
Preferred name:
NM_001257180.2(SLC20A2):c.1897G>T (p.Ala633Ser)
HGVS:
  • NC_000008.11:g.42417865C>A
  • NG_032161.1:g.126974G>T
  • NM_001257180.2:c.1897G>TMANE SELECT
  • NM_001257181.2:c.1897G>T
  • NM_006749.5:c.1897G>T
  • NP_001244109.1:p.Ala633Ser
  • NP_001244110.1:p.Ala633Ser
  • NP_006740.1:p.Ala633Ser
  • NC_000008.10:g.42275383C>A
  • NM_006749.4:c.1897G>T
Protein change:
A633S
Links:
dbSNP: rs147025172
NCBI 1000 Genomes Browser:
rs147025172
Molecular consequence:
  • NM_001257180.2:c.1897G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001257181.2:c.1897G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006749.5:c.1897G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Idiopathic basal ganglia calcification 1 (IBGC1)
Synonyms:
Fahr's syndrome; Cerebral calcification nonarteriosclerotic idiopathic adult-onset; Striopallidodentate calcinosis autosomal dominant adult-onset; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0024538; MedGen: C4551624; Orphanet: 1980; OMIM: 213600

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002025595New York Genome Center - CSER-NYCKidSeq
criteria provided, single submitter

(NYGC Assertion Criteria 2020)
Uncertain significance
(Jul 9, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From New York Genome Center - CSER-NYCKidSeq, SCV002025595.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024