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NM_052865.4(MGME1):c.43A>T (p.Ser15Cys) AND Mitochondrial DNA depletion syndrome 11

Germline classification:
Benign (1 submission)
Last evaluated:
Sep 5, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001775792.2

Allele description [Variation Report for NM_052865.4(MGME1):c.43A>T (p.Ser15Cys)]

NM_052865.4(MGME1):c.43A>T (p.Ser15Cys)

Genes:
LOC126862983:CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:17950167-17951366 [Gene]
MGME1:mitochondrial genome maintenance exonuclease 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20p11.23
Genomic location:
Preferred name:
NM_052865.4(MGME1):c.43A>T (p.Ser15Cys)
HGVS:
  • NC_000020.11:g.17969902A>T
  • NG_042236.1:g.6012A>T
  • NM_001310338.2:c.43A>T
  • NM_001310339.2:c.43A>T
  • NM_001363738.2:c.43A>T
  • NM_052865.4:c.43A>TMANE SELECT
  • NP_001297267.1:p.Ser15Cys
  • NP_001297268.1:p.Ser15Cys
  • NP_001350667.1:p.Ser15Cys
  • NP_443097.1:p.Ser15Cys
  • NC_000020.10:g.17950545A>T
  • NM_052865.2:c.43A>T
Protein change:
S15C
Links:
dbSNP: rs11551768
NCBI 1000 Genomes Browser:
rs11551768
Molecular consequence:
  • NM_001310338.2:c.43A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001310339.2:c.43A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363738.2:c.43A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_052865.4:c.43A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Mitochondrial DNA depletion syndrome 11 (MTDPS11)
Identifiers:
MONDO: MONDO:0014039; MedGen: C3554462; Orphanet: 352447; OMIM: 615084

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002014204Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Sep 5, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genome-Nilou Lab, SCV002014204.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024