NM_014232.3(VAMP2):c.38C>T (p.Pro13Leu) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 7, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001767816.2

Allele description [Variation Report for NM_014232.3(VAMP2):c.38C>T (p.Pro13Leu)]

NM_014232.3(VAMP2):c.38C>T (p.Pro13Leu)

Genes:

LOC130060218:ATAC-STARR-seq lymphoblastoid silent region 8166 [Gene]
VAMP2:vesicle associated membrane protein 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17p13.1

Genomic location:

Preferred name:

NM_014232.3(VAMP2):c.38C>T (p.Pro13Leu)

HGVS:

NC_000017.11:g.8162334G>A
NM_001330125.1:c.44C>T
NM_014232.3:c.38C>TMANE SELECT
NP_001317054.1:p.Pro15Leu
NP_055047.2:p.Pro13Leu
NC_000017.10:g.8065652G>A
NM_014232.2:c.38C>T

Protein change:

P13L

Links:

dbSNP: rs987219719

NCBI 1000 Genomes Browser:

rs987219719

Molecular consequence:

NM_001330125.1:c.44C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_014232.3:c.38C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001999618	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Jan 7, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001999618

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Jan 7, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001999618.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed in large population cohorts (Lek et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously published as pathogenic or benign to our knowledge; Variants in candidate genes are classified as variants of uncertain significance in accordance with ACMG guidelines (Richards et al., 2015)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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