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NM_000304.4(PMP22):c.215C>T (p.Ser72Leu) AND Charcot-Marie-Tooth disease, type IA

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 5, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001729342.1

Allele description [Variation Report for NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)]

NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)

Gene:
PMP22:peripheral myelin protein 22 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p12
Genomic location:
Preferred name:
NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)
HGVS:
  • NC_000017.11:g.15239575G>A
  • NG_007949.1:g.30753C>T
  • NM_000304.4:c.215C>TMANE SELECT
  • NM_001281455.2:c.215C>T
  • NM_001281456.2:c.215C>T
  • NM_001330143.2:c.215C>T
  • NM_153321.3:c.215C>T
  • NM_153322.3:c.215C>T
  • NP_000295.1:p.Ser72Leu
  • NP_001268384.1:p.Ser72Leu
  • NP_001268385.1:p.Ser72Leu
  • NP_001317072.1:p.Ser72Leu
  • NP_696996.1:p.Ser72Leu
  • NP_696997.1:p.Ser72Leu
  • LRG_263t1:c.215C>T
  • LRG_263:g.30753C>T
  • NC_000017.10:g.15142892G>A
  • NM_000304.2:c.215C>T
  • NM_000304.3:c.215C>T
  • NR_104017.2:n.310C>T
  • NR_104018.2:n.210C>T
  • Q01453:p.Ser72Leu
Protein change:
S72L; SER72LEU
Links:
UniProtKB: Q01453#VAR_006363; OMIM: 601097.0007; dbSNP: rs104894621
NCBI 1000 Genomes Browser:
rs104894621
Molecular consequence:
  • NM_000304.4:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281455.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281456.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330143.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153321.3:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153322.3:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104017.2:n.310C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104018.2:n.210C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Charcot-Marie-Tooth disease, type IA (CMT1A)
Synonyms:
CHARCOT-MARIE-TOOTH DISEASE, AUTOSOMAL DOMINANT, WITH FOCALLY FOLDED MYELIN SHEATHS, TYPE 1A; CHARCOT-MARIE-TOOTH NEUROPATHY, TYPE 1A; HEREDITARY MOTOR AND SENSORY NEUROPATHY IA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007309; MedGen: C0270911; Orphanet: 101081; OMIM: 118220

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001976812Laboratory of Medical Genetics, National & Kapodistrian University of Athens
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Oct 5, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratory of Medical Genetics, National & Kapodistrian University of Athens, SCV001976812.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PM1, PM2, PM5, PP3, PP5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024