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NM_000314.8(PTEN):c.-511G>A AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Feb 24, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001692338.5

Allele description

NM_000314.8(PTEN):c.-511G>A

Gene:
PTEN:phosphatase and tensin homolog [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q23.31
Genomic location:
Preferred name:
NM_000314.8(PTEN):c.-511G>A
HGVS:
  • NC_000010.11:g.87863959G>A
  • NG_007466.2:g.5522G>A
  • NG_033079.1:g.4479C>T
  • NM_000314.8:c.-511G>AMANE SELECT
  • NM_001304717.5:c.10G>A
  • NM_001304718.2:c.-1215G>A
  • NP_001291646.4:p.Gly4Arg
  • LRG_1087:g.4479C>T
  • LRG_311:g.5522G>A
  • NC_000010.10:g.89623716G>A
  • NM_001304717.5:c.10G>A
Protein change:
G4R
Links:
dbSNP: rs12573787
NCBI 1000 Genomes Browser:
rs12573787
Molecular consequence:
  • NM_000314.8:c.-511G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001304718.2:c.-1215G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001304717.5:c.10G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001156740ARUP Laboratories, Molecular Genetics and Genomics,ARUP Laboratories
criteria provided, single submitter

(arup molecular germline variant investigation process 2021)
Benign
(Feb 24, 2022)
germlineclinical testing

Citation Link,

SCV001906294Clinical Genetics Laboratory, Department of Pathology,Netherlands Cancer Institute - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics,ARUP Laboratories, SCV001156740.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics Laboratory, Department of Pathology,Netherlands Cancer Institute - VKGL Data-share Consensus, SCV001906294.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 19, 2022