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NM_002968.3(SALL1):c.448AGC[13] (p.Ser157_Ser159dup) AND not provided

Germline classification:
Benign (3 submissions)
Last evaluated:
Mar 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001573512.12

Allele description [Variation Report for NM_002968.3(SALL1):c.448AGC[13] (p.Ser157_Ser159dup)]

NM_002968.3(SALL1):c.448AGC[13] (p.Ser157_Ser159dup)

Gene:
SALL1:spalt like transcription factor 1 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
16q12.1
Genomic location:
Preferred name:
NM_002968.3(SALL1):c.448AGC[13] (p.Ser157_Ser159dup)
HGVS:
  • NC_000016.10:g.51141745GCT[13]
  • NC_000016.10:g.51141745_51141747GCT[13]
  • NG_007990.1:g.14499AGC[13]
  • NM_001127892.2:c.157AGC[13]
  • NM_002968.3:c.448AGC[13]MANE SELECT
  • NP_001121364.1:p.Ser60_Ser62dup
  • NP_002959.2:p.Ser157_Ser159dup
  • LRG_674t1:c.469_477dup
  • LRG_674:g.14499AGC[13]
  • NC_000016.9:g.51175655_51175656insGCTGCTGCT
  • NC_000016.9:g.51175656GCT[13]
  • NM_002968.2:c.469_477dup
  • NM_002968.2:c.469_477dupAGCAGCAGC
  • NM_002968.3:c.469_477dupMANE SELECT
Links:
dbSNP: rs113614842
NCBI 1000 Genomes Browser:
rs113614842
Molecular consequence:
  • NM_001127892.2:c.157AGC[13] - inframe_insertion - [Sequence Ontology: SO:0001821]
  • NM_002968.3:c.448AGC[13] - inframe_insertion - [Sequence Ontology: SO:0001821]
Observations:
4

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001799502Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV001914337GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Jul 26, 2019)
germlineclinical testing

Citation Link,

SCV004139363CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Mar 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes4not providednot providednot providednot providedclinical testing

Details of each submission

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001799502.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001914337.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004139363.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided4not providednot providedclinical testingnot provided

Description

SALL1: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided4not providednot providednot provided

Last Updated: Oct 20, 2024