NM_002778.4(PSAP):c.720+287del AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 2, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001555830.2

Allele description [Variation Report for NM_002778.4(PSAP):c.720+287del]

NM_002778.4(PSAP):c.720+287del

Gene:

PSAP:prosaposin [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

10q22.1

Genomic location:

Preferred name:

NM_002778.4(PSAP):c.720+287del

HGVS:

NC_000010.11:g.71827744del
NG_009301.1:g.28599del
NM_001042465.3:c.720+287del
NM_001042466.3:c.720+287del
NM_002778.4:c.720+287delMANE SELECT
NC_000010.10:g.73587501del

Links:

dbSNP: rs1183654773

NCBI 1000 Genomes Browser:

rs1183654773

Molecular consequence:

NM_001042465.3:c.720+287del - intron variant - [Sequence Ontology: SO:0001627]
NM_001042466.3:c.720+287del - intron variant - [Sequence Ontology: SO:0001627]
NM_002778.4:c.720+287del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001777304	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Sep 2, 2019)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001777304

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Sep 2, 2019)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001777304.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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