NM_001371279.1(REEP1):c.*2049del AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Oct 29, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001551372.2

Allele description [Variation Report for NM_001371279.1(REEP1):c.*2049del]

NM_001371279.1(REEP1):c.*2049del

Gene:

REEP1:receptor accessory protein 1 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2p11.2

Genomic location:

Preferred name:

NM_001371279.1(REEP1):c.*2049del

HGVS:

NC_000002.12:g.86215002del
NG_013037.1:g.128094del
NM_001164730.2:c.*2110del
NM_001164731.2:c.*2110del
NM_001164732.2:c.*2049del
NM_001371279.1:c.*2049delMANE SELECT
NM_001371280.1:c.*2049del
NM_022912.3:c.*2110del
LRG_713:g.128094del
NC_000002.11:g.86442125del

Links:

dbSNP: rs200132323

NCBI 1000 Genomes Browser:

rs200132323

Molecular consequence:

NM_001164730.2:c.*2110del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001164731.2:c.*2110del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001164732.2:c.*2049del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001371279.1:c.*2049del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001371280.1:c.*2049del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_022912.3:c.*2110del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001771863	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Oct 29, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001771863

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Oct 29, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001771863.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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