U.S. flag

An official website of the United States government

NM_178525.5(ACTL9):c.1034C>T (p.Ser345Leu) AND Spermatogenic failure 53

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 1, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001353192.1

Allele description [Variation Report for NM_178525.5(ACTL9):c.1034C>T (p.Ser345Leu)]

NM_178525.5(ACTL9):c.1034C>T (p.Ser345Leu)

Gene:
ACTL9:actin like 9 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_178525.5(ACTL9):c.1034C>T (p.Ser345Leu)
HGVS:
  • NC_000019.10:g.8697668G>A
  • NM_178525.5:c.1034C>TMANE SELECT
  • NP_848620.3:p.Ser345Leu
  • NC_000019.9:g.8808018G>A
Protein change:
S345L; SER345LEU
Links:
OMIM: 619251.0001; dbSNP: rs1478948010
NCBI 1000 Genomes Browser:
rs1478948010
Molecular consequence:
  • NM_178525.5:c.1034C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Spermatogenic failure 53
Identifiers:
MONDO: MONDO:0030989; MedGen: C5543253; OMIM: 619258

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001548354OMIM
no assertion criteria provided
Pathogenic
(Apr 1, 2021)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Homozygous pathogenic variants in ACTL9 cause fertilization failure and male infertility in humans and mice.

Dai J, Zhang T, Guo J, Zhou Q, Gu Y, Zhang J, Hu L, Zong Y, Song J, Zhang S, Dai C, Gong F, Lu G, Zheng W, Lin G.

Am J Hum Genet. 2021 Mar 4;108(3):469-481. doi: 10.1016/j.ajhg.2021.02.004. Epub 2021 Feb 23.

PubMed [citation]
PMID:
33626338
PMCID:
PMC8008497

Details of each submission

From OMIM, SCV001548354.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 29-year-old infertile Chinese man (family 1) who had oocyte fertilization failure due to lack of oocyte activation (SPGF53; 619258), Dai et al. (2021) identified homozygosity for a c.1034C-T transition (c.1034C-T, NM_178525.5) in the ACTL9 gene, resulting in a ser345-to-leu (S345L) substitution at a highly conserved residue. His unaffected parents were heterozygous for the mutation, which was not found in 100 fertile men or in the East Asian population of ExAC, but was present at low frequency in the East Asian population of the gnomAD database (5.4 x 10(-5)). Immunostaining of patient sperm revealed that, unlike in normal sperm, ACTL9 signal did not overlap with that of its paralog, ACTL7A (604303). Intensity profiles showed that none of the mutant sperm manifested a strong signal in the equatorial segment, and the acrosome showed no cap structure. Coimmunoprecipitation assay confirmed that the interaction between ACTL9 and ACTL7A was weakened in S345L mutant sperm. Immunostaining in mutant capacitated sperm for a key oocyte activation factor, PLCZ1 (608075), showed absence or abnormal localization in the neck rather than the equatorial segment of the head. Monitoring Ca(2+) oscillations in oocytes injected with mutant sperm showed absence of the Ca(2+) spikes that would normally be seen. Oocytes injected with normal sperm showed diffuse PLCZ1 in the ooplasm with sperm asters forming around the sperm nucleus, and the oocytes exited metaphase II (MII) with extrusion of the second polar body; in contrast, oocytes injected with S345L mutant sperm remained in MII arrest, with some showing PLCZ1 retained around the sperm head and failure to form the sperm aster, and others showing total absence of PLCZ1 signals in the ooplasm or in the area of the sperm nucleus.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023