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NM_001042616.3(PIGY):c.101G>A (p.Cys34Tyr) AND Hyperphosphatasia with intellectual disability syndrome 6

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 7, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001335596.1

Allele description [Variation Report for NM_001042616.3(PIGY):c.101G>A (p.Cys34Tyr)]

NM_001042616.3(PIGY):c.101G>A (p.Cys34Tyr)

Genes:
PYURF:PIGY upstream open reading frame [Gene - OMIM - HGNC]
PIGY:phosphatidylinositol glycan anchor biosynthesis class Y [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q22.1
Genomic location:
Preferred name:
NM_001042616.3(PIGY):c.101G>A (p.Cys34Tyr)
HGVS:
  • NC_000004.12:g.88521689C>T
  • NG_046719.1:g.7113G>A
  • NM_001042616.3:c.101G>AMANE SELECT
  • NM_032906.5:c.*199G>AMANE SELECT
  • NP_001036081.1:p.Cys34Tyr
  • NC_000004.11:g.89442840C>T
  • NM_001042616.2:c.101G>A
Protein change:
C34Y
Links:
dbSNP: rs1399588452
NCBI 1000 Genomes Browser:
rs1399588452
Molecular consequence:
  • NM_032906.5:c.*199G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001042616.3:c.101G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hyperphosphatasia with intellectual disability syndrome 6 (HPMRS6)
Synonyms:
GLYCOSYLPHOSPHATIDYLINOSITOL BIOSYNTHESIS DEFECT 12; HYPERPHOSPHATASIA WITH IMPAIRED INTELLECTUAL DEVELOPMENT SYNDROME 6
Identifiers:
MONDO: MONDO:0014780; MedGen: C4225201; Orphanet: 247262; OMIM: 616809

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001528777Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Dec 7, 2018) 		maternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001528777.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024