NM_004714.3(DYRK1B):c.1541G>A (p.Arg514Gln) AND Abdominal obesity-metabolic syndrome 3

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Sep 22, 2024
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001331293.2

Allele description [Variation Report for NM_004714.3(DYRK1B):c.1541G>A (p.Arg514Gln)]

NM_004714.3(DYRK1B):c.1541G>A (p.Arg514Gln)

Gene:

DYRK1B:dual specificity tyrosine phosphorylation regulated kinase 1B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.2

Genomic location:

Preferred name:

NM_004714.3(DYRK1B):c.1541G>A (p.Arg514Gln)

HGVS:

NC_000019.10:g.39826064C>T
NG_034145.1:g.13170G>A
NM_004714.3:c.1541G>AMANE SELECT
NM_006483.3:c.1421G>A
NM_006484.3:c.1457G>A
NP_004705.1:p.Arg514Gln
NP_006474.1:p.Arg474Gln
NP_006475.1:p.Arg486Gln
NC_000019.9:g.40316704C>T
NM_004714.1:c.1541G>A

Protein change:

R474Q

Links:

dbSNP: rs1333583026

NCBI 1000 Genomes Browser:

rs1333583026

Molecular consequence:

NM_004714.3:c.1541G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006483.3:c.1421G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006484.3:c.1457G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Abdominal obesity-metabolic syndrome 3 (AOMS3)
Synonyms:: CENTRAL OBESITY, TYPE 2 DIABETES, HYPERTENSION, AND EARLY-ONSET CORONARY ARTERY DISEASE
Identifiers:: MONDO: MONDO:0014352; MedGen: C4014361; OMIM: 615812

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001523304	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Jun 3, 2020)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV005374461	Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Sep 22, 2024)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001523304

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Jun 3, 2020)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005374461

Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Sep 22, 2024)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV001523304.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV005374461.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 20, 2024

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