NM_015028.4(TNIK):c.2869A>G (p.Met957Val) AND Intellectual disability, autosomal recessive 54

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 7, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001330593.1

Allele description [Variation Report for NM_015028.4(TNIK):c.2869A>G (p.Met957Val)]

NM_015028.4(TNIK):c.2869A>G (p.Met957Val)

Gene:

TNIK:TRAF2 and NCK interacting kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3q26.2

Genomic location:

Preferred name:

NM_015028.4(TNIK):c.2869A>G (p.Met957Val)

HGVS:

NC_000003.12:g.171087359T>C
NG_054934.1:g.378050A>G
NM_001161560.3:c.2845A>G
NM_001161561.3:c.2782A>G
NM_001161562.3:c.2758A>G
NM_001161563.3:c.2704A>G
NM_001161564.3:c.2680A>G
NM_001161565.3:c.2617A>G
NM_001161566.3:c.2593A>G
NM_015028.4:c.2869A>GMANE SELECT
NP_001155032.1:p.Met949Val
NP_001155033.1:p.Met928Val
NP_001155034.1:p.Met920Val
NP_001155035.1:p.Met902Val
NP_001155036.1:p.Met894Val
NP_001155037.1:p.Met873Val
NP_001155038.1:p.Met865Val
NP_055843.1:p.Met957Val
NC_000003.11:g.170805148T>C
NM_015028.2:c.2869A>G

Protein change:

M865V

Links:

dbSNP: rs200347488

NCBI 1000 Genomes Browser:

rs200347488

Molecular consequence:

NM_001161560.3:c.2845A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161561.3:c.2782A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161562.3:c.2758A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161563.3:c.2704A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161564.3:c.2680A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161565.3:c.2617A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001161566.3:c.2593A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_015028.4:c.2869A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Intellectual disability, autosomal recessive 54 (MRT54)
Identifiers:: MONDO: MONDO:0014876; MedGen: C4310755; Orphanet: 88616; OMIM: 617028

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001522319	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 7, 2019)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001522319

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 7, 2019)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV001522319.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 5, 2023

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