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NM_052867.4(NALCN):c.2786T>C (p.Met929Thr) AND Congenital contractures of the limbs and face, hypotonia, and developmental delay

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 16, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001330240.2

Allele description [Variation Report for NM_052867.4(NALCN):c.2786T>C (p.Met929Thr)]

NM_052867.4(NALCN):c.2786T>C (p.Met929Thr)

Gene:
NALCN:sodium leak channel, non-selective [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q33.1
Genomic location:
Preferred name:
NM_052867.4(NALCN):c.2786T>C (p.Met929Thr)
HGVS:
  • NC_000013.11:g.101104398A>G
  • NG_053176.1:g.317809T>C
  • NM_001350748.2:c.2873T>C
  • NM_001350749.2:c.2786T>C
  • NM_001350750.2:c.2699T>C
  • NM_001350751.2:c.2699T>C
  • NM_052867.4:c.2786T>CMANE SELECT
  • NP_001337677.1:p.Met958Thr
  • NP_001337678.1:p.Met929Thr
  • NP_001337679.1:p.Met900Thr
  • NP_001337680.1:p.Met900Thr
  • NP_443099.1:p.Met929Thr
  • NC_000013.10:g.101756749A>G
  • NM_052867.2:c.2786T>C
Protein change:
M900T
Links:
dbSNP: rs2034987913
NCBI 1000 Genomes Browser:
rs2034987913
Molecular consequence:
  • NM_001350748.2:c.2873T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350749.2:c.2786T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350750.2:c.2699T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350751.2:c.2699T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_052867.4:c.2786T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Congenital contractures of the limbs and face, hypotonia, and developmental delay (CLIFAHDD)
Identifiers:
MONDO: MONDO:0014556; MedGen: C4225398; OMIM: 616266

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001521864Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Jul 16, 2020) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001521864.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 7, 2023