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NM_024301.5(FKRP):c.-253+4A>G AND Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 22, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001330167.1

Allele description [Variation Report for NM_024301.5(FKRP):c.-253+4A>G]

NM_024301.5(FKRP):c.-253+4A>G

Genes:
LOC130064775:ATAC-STARR-seq lymphoblastoid silent region 10825 [Gene]
FKRP:fukutin related protein [Gene - OMIM - HGNC]
STRN4:striatin 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_024301.5(FKRP):c.-253+4A>G
HGVS:
  • NC_000019.10:g.46746094A>G
  • NG_008898.2:g.5049A>G
  • NG_199192.1:g.199A>G
  • NM_001039877.2:c.282+55T>C
  • NM_001039885.3:c.-305+4A>G
  • NM_013403.3:c.282+55T>CMANE SELECT
  • NM_024301.5:c.-253+4A>GMANE SELECT
  • LRG_761t1:c.-253+4A>G
  • LRG_761:g.5049A>G
  • NC_000019.9:g.47249351A>G
  • NM_001039885.2:c.-305+4A>G
Links:
dbSNP: rs2054592600
NCBI 1000 Genomes Browser:
rs2054592600
Molecular consequence:
  • NM_001039877.2:c.282+55T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001039885.3:c.-305+4A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_013403.3:c.282+55T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_024301.5:c.-253+4A>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5
Synonyms:
MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE ANOMALIES), TYPE A, 5; WALKER-WARBURG SYNDROME OR MUSCLE-EYE-BRAIN DISEASE, FKRP-RELATED; Congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A5
Identifiers:
MONDO: MONDO:0013157; MedGen: C3150413; Orphanet: 588; Orphanet: 899; OMIM: 613153

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001521779Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Nov 22, 2019) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001521779.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024