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NM_024818.6(UBA5):c.638C>T (p.Ser213Leu) AND Inborn genetic diseases

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 13, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001267087.2

Allele description [Variation Report for NM_024818.6(UBA5):c.638C>T (p.Ser213Leu)]

NM_024818.6(UBA5):c.638C>T (p.Ser213Leu)

Genes:
NPHP3-ACAD11:NPHP3-ACAD11 readthrough (NMD candidate) [Gene - HGNC]
UBA5:ubiquitin like modifier activating enzyme 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q22.1
Genomic location:
Preferred name:
NM_024818.6(UBA5):c.638C>T (p.Ser213Leu)
HGVS:
  • NC_000003.12:g.132671835C>T
  • NG_052968.1:g.22390C>T
  • NM_001320210.2:c.470C>T
  • NM_001321238.2:c.368C>T
  • NM_001321239.1:c.302C>T
  • NM_024818.6:c.638C>TMANE SELECT
  • NM_198329.4:c.470C>T
  • NP_001307139.1:p.Ser157Leu
  • NP_001308167.1:p.Ser123Leu
  • NP_001308168.1:p.Ser101Leu
  • NP_079094.1:p.Ser213Leu
  • NP_938143.1:p.Ser157Leu
  • NC_000003.11:g.132390679C>T
  • NM_024818.3:c.638C>T
Protein change:
S101L
Links:
dbSNP: rs376997494
NCBI 1000 Genomes Browser:
rs376997494
Molecular consequence:
  • NM_001320210.2:c.470C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321238.2:c.368C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321239.1:c.302C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024818.6:c.638C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198329.4:c.470C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001445268Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Likely pathogenic
(Jun 13, 2019)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasiangermlineyes1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV001445268.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Jan 7, 2023