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NM_152419.3(HGSNAT):c.715C>T (p.Arg239Cys) AND Retinitis pigmentosa 73

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 1, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001250769.1

Allele description [Variation Report for NM_152419.3(HGSNAT):c.715C>T (p.Arg239Cys)]

NM_152419.3(HGSNAT):c.715C>T (p.Arg239Cys)

Gene:
HGSNAT:heparan-alpha-glucosaminide N-acetyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8p11.21
Genomic location:
Preferred name:
NM_152419.3(HGSNAT):c.715C>T (p.Arg239Cys)
HGVS:
  • NC_000008.11:g.43170666C>T
  • NG_009552.1:g.35218C>T
  • NM_001363227.2:c.715C>T
  • NM_001363228.2:c.715C>T
  • NM_001363229.2:c.-119C>T
  • NM_152419.3:c.715C>TMANE SELECT
  • NP_001350156.1:p.Arg239Cys
  • NP_001350157.1:p.Arg239Cys
  • NP_689632.2:p.Arg239Cys
  • NC_000008.10:g.43025809C>T
  • NC_000008.10:g.43025809C>T
  • NM_152419.2:c.715C>T
Protein change:
R239C
Links:
dbSNP: rs369292480
NCBI 1000 Genomes Browser:
rs369292480
Molecular consequence:
  • NM_001363229.2:c.-119C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001363227.2:c.715C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363228.2:c.715C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_152419.3:c.715C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Retinitis pigmentosa 73 (RP73)
Identifiers:
MONDO: MONDO:0014687; MedGen: C4225287; Orphanet: 791; OMIM: 616544

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001426183Inherited Eye Disorders lab, UCL Institute of Ophthalmology
no assertion criteria provided
Likely pathogenic
(Jul 1, 2020)
inheritedclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Inherited Eye Disorders lab, UCL Institute of Ophthalmology, SCV001426183.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024