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NC_000011.10:g.47337730dup AND Cardiomyopathy

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Jun 14, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001170419.9

Allele description [Variation Report for NC_000011.10:g.47337730dup]

NC_000011.10:g.47337730dup

Gene:
MYBPC3:myosin binding protein C3 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NC_000011.10:g.47337730dup
Other names:
p.Trp792ValfsX41; p.Trp792Valfs*41
HGVS:
  • NC_000011.10:g.47337730dup
  • NG_007667.1:g.19973dup
  • NM_000256.3:c.2373dupMANE SELECT
  • NM_000256.3:c.2373dupG
  • NP_000247.2:p.Trp792fs
  • LRG_386t1:c.2373dup
  • LRG_386:g.19973dup
  • LRG_386p1:p.Trp792fs
  • NC_000011.10:g.47337729_47337730insC
  • NC_000011.9:g.47359281dup
  • NM_000256.3:c.2372_2373insGMANE SELECT
  • NM_000256.3:c.2373dupGMANE SELECT
  • c.2373_2374insG
  • p.W792VfsX41
Protein change:
W792fs
Links:
OMIM: 600958.0011; dbSNP: rs397515963
NCBI 1000 Genomes Browser:
rs397515963

Condition(s)

Name:
Cardiomyopathy (CMYO)
Synonyms:
Cardiomyopathies
Identifiers:
MONDO: MONDO:0004994; MedGen: C0878544; Human Phenotype Ontology: HP:0001638

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001332997CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 14, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001344628Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Mar 21, 2023)
germlineclinical testing

PubMed (11)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutations in the gene for cardiac myosin-binding protein C and late-onset familial hypertrophic cardiomyopathy.

Niimura H, Bachinski LL, Sangwatanaroj S, Watkins H, Chudley AE, McKenna W, Kristinsson A, Roberts R, Sole M, Maron BJ, Seidman JG, Seidman CE.

N Engl J Med. 1998 Apr 30;338(18):1248-57.

PubMed [citation]
PMID:
9562578

A newly created splice donor site in exon 25 of the MyBP-C gene is responsible for inherited hypertrophic cardiomyopathy with incomplete disease penetrance.

Moolman JA, Reith S, Uhl K, Bailey S, Gautel M, Jeschke B, Fischer C, Ochs J, McKenna WJ, Klues H, Vosberg HP.

Circulation. 2000 Mar 28;101(12):1396-402.

PubMed [citation]
PMID:
10736283
See all PubMed Citations (11)

Details of each submission

From CHEO Genetics Diagnostic Laboratory, Children's Hospital of Eastern Ontario, SCV001332997.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Color Diagnostics, LLC DBA Color Health, SCV001344628.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (11)

Description

This variant inserts 1 nucleotide in exon 24 of the fibronectin type 3 domain C6 of the MYBPC3 gene, creating a frameshift and premature translation stop signal. This variant is expected to result in an absent or non-functional protein product. RNA studies have shown that this variant creates a new splice donor site, which could also result in a frameshift and premature truncation (PMID: 10736283). This variant has been reported in over 300 individuals affected with hypertrophic cardiomyopathy (PMID: 9562578, 14563344, 19273718, 20505798, 22115648, 22574137, 35653365) and occurs in up to 25% of Dutch individuals affected with hypertrophic cardiomyopathy (PMID: 14563344, 20505798). A study of a large multigenerational family affected with hypertrophic cardiomyopathy has shown that penetrance of this variant is incomplete and age-dependent (PMID: 10736283). This variant has also been reported in an individual affected with dilated cardiomyopathy (PMID: 32880476), and it has also been reported in compound heterozygous or homozygous state in three Dutch neonates with lethal cardiomyopathy (PMID: 25335496). This variant has been identified in 3/172018 chromosomes in the general population by the Genome Aggregation Database (gnomAD). Loss of MYBPC3 function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024