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NM_001347721.2(DYRK1A):c.586C>T (p.Arg196Ter) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001003637.2

Allele description [Variation Report for NM_001347721.2(DYRK1A):c.586C>T (p.Arg196Ter)]

NM_001347721.2(DYRK1A):c.586C>T (p.Arg196Ter)

Gene:
DYRK1A:dual specificity tyrosine phosphorylation regulated kinase 1A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.13
Genomic location:
Preferred name:
NM_001347721.2(DYRK1A):c.586C>T (p.Arg196Ter)
Other names:
NM_001347721.2(DYRK1A):c.586C>T; p.Arg196Ter
HGVS:
  • NC_000021.9:g.37486563C>T
  • NG_009366.1:g.124007C>T
  • NM_001347721.2:c.586C>TMANE SELECT
  • NM_001347722.2:c.586C>T
  • NM_001347723.2:c.499C>T
  • NM_001396.5:c.613C>T
  • NM_101395.2:c.613C>T
  • NM_130436.2:c.586C>T
  • NM_130438.2:c.613C>T
  • NP_001334650.1:p.Arg196Ter
  • NP_001334651.1:p.Arg196Ter
  • NP_001334652.1:p.Arg167Ter
  • NP_001387.2:p.Arg205Ter
  • NP_567824.1:p.Arg205Ter
  • NP_569120.1:p.Arg196Ter
  • NP_569122.1:p.Arg205Ter
  • NC_000021.8:g.38858865C>T
  • NM_001347721.2:c.586C>T
  • NM_001396.3:c.613C>T
  • NM_001396.4:c.613C>T
  • NM_001396.5:c.613C>T
  • g.38858865C>T
  • p.Arg205*
Protein change:
R167*
Links:
dbSNP: rs724159949
NCBI 1000 Genomes Browser:
rs724159949
Molecular consequence:
  • NM_001347721.2:c.586C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001347722.2:c.586C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001347723.2:c.499C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001396.5:c.613C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_101395.2:c.613C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_130436.2:c.586C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_130438.2:c.613C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Global developmental delay (DD)
Identifiers:
MedGen: C0557874; Human Phenotype Ontology: HP:0001263
Name:
Microphthalmia
Synonyms:
Microphthalmos
Identifiers:
MONDO: MONDO:0021129; MedGen: C0026010; Human Phenotype Ontology: HP:0000568
Name:
Microcephaly
Synonyms:
Microcephaly (disease)
Identifiers:
MONDO: MONDO:0001149; MedGen: C4551563; Human Phenotype Ontology: HP:0000252
Name:
Generalized-onset seizure
Synonyms:
Generalized seizures
Identifiers:
MedGen: C0234533; Human Phenotype Ontology: HP:0002197

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001162064NIHR Bioresource Rare Diseases, University of Cambridge
no assertion criteria provided
Pathogenicunknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot provided1not providedresearch

Citations

PubMed

Whole-genome sequencing of patients with rare diseases in a national health system.

Turro E, Astle WJ, Megy K, Gräf S, Greene D, Shamardina O, Allen HL, Sanchis-Juan A, Frontini M, Thys C, Stephens J, Mapeta R, Burren OS, Downes K, Haimel M, Tuna S, Deevi SVV, Aitman TJ, Bennett DL, Calleja P, Carss K, Caulfield MJ, et al.

Nature. 2020 Jul;583(7814):96-102. doi: 10.1038/s41586-020-2434-2. Epub 2020 Jun 24.

PubMed [citation]
PMID:
32581362
PMCID:
PMC7610553

Details of each submission

From NIHR Bioresource Rare Diseases, University of Cambridge, SCV001162064.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes1not providednot provided1not providednot providednot provided

Last Updated: Oct 8, 2024