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NM_000330.4(RS1):c.523-2A>G AND Retinoschisis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 23, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001003216.9

Allele description [Variation Report for NM_000330.4(RS1):c.523-2A>G]

NM_000330.4(RS1):c.523-2A>G

Genes:
CDKL5:cyclin dependent kinase like 5 [Gene - OMIM - HGNC]
RS1:retinoschisin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp22.13
Genomic location:
Preferred name:
NM_000330.4(RS1):c.523-2A>G
HGVS:
  • NC_000023.11:g.18642158T>C
  • NG_008475.1:g.221554T>C
  • NG_008659.3:g.40291A>G
  • NM_000330.4:c.523-2A>GMANE SELECT
  • NM_001037343.2:c.2714-3849T>C
  • NM_003159.3:c.2714-3849T>C
  • LRG_702t1:c.523-2A>G
  • LRG_702:g.40291A>G
  • NC_000023.10:g.18660278T>C
  • NM_000330.3:c.523-2A>G
Links:
dbSNP: rs281865349
NCBI 1000 Genomes Browser:
rs281865349
Molecular consequence:
  • NM_001037343.2:c.2714-3849T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_003159.3:c.2714-3849T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000330.4:c.523-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Name:
Retinoschisis
Identifiers:
MONDO: MONDO:0004579; MedGen: C0152439; Human Phenotype Ontology: HP:0030502

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001161294Sharon lab, Hadassah-Hebrew University Medical Center
no assertion criteria provided
Pathogenic
(Jun 23, 2019)
inheritedresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Sharon lab, Hadassah-Hebrew University Medical Center, SCV001161294.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024