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NM_001134225.2(INPP4A):c.352_353del (p.Ser118fs) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 20, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000991365.2

Allele description [Variation Report for NM_001134225.2(INPP4A):c.352_353del (p.Ser118fs)]

NM_001134225.2(INPP4A):c.352_353del (p.Ser118fs)

Gene:
INPP4A:inositol polyphosphate-4-phosphatase type I A [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
2q11.2
Genomic location:
Preferred name:
NM_001134225.2(INPP4A):c.352_353del (p.Ser118fs)
HGVS:
  • NC_000002.12:g.98535808TC[1]
  • NC_000002.12:g.98535808_98535809TC[1]
  • NG_029890.1:g.95951TC[1]
  • NM_001134224.2:c.352_353del
  • NM_001134225.2:c.352_353delMANE SELECT
  • NM_001351424.1:c.352_353del
  • NM_001351425.2:c.352_353del
  • NM_001351426.2:c.352_353del
  • NM_001351427.2:c.352_353del
  • NM_001351428.2:c.352_353del
  • NM_001351429.2:c.352_353del
  • NM_001566.2:c.352_353del
  • NM_004027.3:c.352_353del
  • NP_001127696.1:p.Ser118fs
  • NP_001127697.1:p.Ser118fs
  • NP_001338353.1:p.Ser118fs
  • NP_001338354.1:p.Ser118fs
  • NP_001338355.1:p.Ser118fs
  • NP_001338356.1:p.Ser118fs
  • NP_001338357.1:p.Ser118fs
  • NP_001338358.1:p.Ser118fs
  • NP_001557.1:p.Ser118fs
  • NP_004018.1:p.Ser118fs
  • NC_000002.11:g.99152271TC[1]
Protein change:
S118fs
Links:
dbSNP: rs1574965220
NCBI 1000 Genomes Browser:
rs1574965220
Molecular consequence:
  • NM_001134224.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001134225.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351424.1:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351425.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351426.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351427.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351428.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001351429.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001566.2:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_004027.3:c.352_353del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Pectus excavatum
Synonyms:
funnel chest
Identifiers:
MONDO: MONDO:0008213; MedGen: C2051831; OMIM: 169300; Human Phenotype Ontology: HP:0000767
Name:
Nystagmus
Identifiers:
MONDO: MONDO:0004843; MedGen: C0028738; Human Phenotype Ontology: HP:0000639
Name:
Microcephaly
Synonyms:
Microcephaly (disease)
Identifiers:
MONDO: MONDO:0001149; MedGen: C4551563; Human Phenotype Ontology: HP:0000252
Name:
Hypotonia
Synonyms:
Muscular hypotonia; poor muscle tone
Identifiers:
MedGen: C0026827; Human Phenotype Ontology: HP:0001252
Name:
visual disturbance
Identifiers:
MedGen: C0547030

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001142758Hadassah Hebrew University Medical Center
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jun 20, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Hadassah Hebrew University Medical Center, SCV001142758.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 30, 2023