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NM_000527.5(LDLR):c.1747C>T (p.His583Tyr) AND Homozygous familial hypercholesterolemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 16, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000825621.6

Allele description [Variation Report for NM_000527.5(LDLR):c.1747C>T (p.His583Tyr)]

NM_000527.5(LDLR):c.1747C>T (p.His583Tyr)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1747C>T (p.His583Tyr)
Other names:
p.H583Y:CAC>TAC; NP_000518.1:p.H583Y
HGVS:
  • NC_000019.10:g.11116900C>T
  • NG_009060.1:g.32520C>T
  • NM_000527.5:c.1747C>TMANE SELECT
  • NM_001195798.2:c.1747C>T
  • NM_001195799.2:c.1624C>T
  • NM_001195800.2:c.1243C>T
  • NM_001195803.2:c.1366C>T
  • NP_000518.1:p.His583Tyr
  • NP_000518.1:p.His583Tyr
  • NP_001182727.1:p.His583Tyr
  • NP_001182728.1:p.His542Tyr
  • NP_001182729.1:p.His415Tyr
  • NP_001182732.1:p.His456Tyr
  • LRG_274t1:c.1747C>T
  • LRG_274:g.32520C>T
  • LRG_274p1:p.His583Tyr
  • NC_000019.9:g.11227576C>T
  • NM_000527.4:c.1747C>T
  • c.1747C>T
Protein change:
H415Y
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000234; dbSNP: rs730882109
NCBI 1000 Genomes Browser:
rs730882109
Molecular consequence:
  • NM_000527.5:c.1747C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1747C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.1624C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.1243C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.1366C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Homozygous familial hypercholesterolemia
Synonyms:
Familial hypercholesterolemia - homozygous
Identifiers:
MONDO: MONDO:0018328; MedGen: C0342881

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000966973Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Pathogenic
(Dec 16, 2020)
germlineclinical testing

PubMed (10)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown11not providednot providednot providedclinical testing

Citations

PubMed

Familial hypercholesterolemia in China. Identification of mutations in the LDL-receptor gene that result in a receptor-negative phenotype.

Sun XM, Patel DD, Webb JC, Knight BL, Fan LM, Cai HJ, Soutar AK.

Arterioscler Thromb. 1994 Jan;14(1):85-94.

PubMed [citation]
PMID:
7903864

Low density lipoprotein--receptor (LDL-R) gene mutations among Filipinos with familial hypercholesterolemia.

Punzalan FE, Sy RG, Santos RS, Cutiongco EM, Gosiengfiao S, Fadriguilan E, George P, Laurie A.

J Atheroscler Thromb. 2005;12(5):276-83.

PubMed [citation]
PMID:
16205024
See all PubMed Citations (10)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000966973.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (10)

Description

proposed classification - variant undergoing re-assessment, contact laboratory

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not provided1not provided

Last Updated: Sep 29, 2024