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NM_013382.7(POMT2):c.672del (p.Trp225fs) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 1, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000731600.4

Allele description [Variation Report for NM_013382.7(POMT2):c.672del (p.Trp225fs)]

NM_013382.7(POMT2):c.672del (p.Trp225fs)

Genes:
LOC130056175:ATAC-STARR-seq lymphoblastoid silent region 5968 [Gene]
POMT2:protein O-mannosyltransferase 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
14q24.3
Genomic location:
Preferred name:
NM_013382.7(POMT2):c.672del (p.Trp225fs)
HGVS:
  • NC_000014.9:g.77301238del
  • NG_008897.1:g.24649del
  • NM_013382.7:c.672delMANE SELECT
  • NP_037514.2:p.Trp225fs
  • LRG_844:g.24649del
  • NC_000014.8:g.77767577del
  • NC_000014.8:g.77767581del
Protein change:
W225fs
Links:
dbSNP: rs1566656247
NCBI 1000 Genomes Browser:
rs1566656247
Molecular consequence:
  • NM_013382.7:c.672del - frameshift variant - [Sequence Ontology: SO:0001589]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000859440Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Pathogenic
(Feb 1, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From Eurofins Ntd Llc (ga), SCV000859440.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024