NM_001130987.2(DYSF):c.225G>A (p.Thr75=) AND not provided

Germline classification:: Conflicting interpretations of pathogenicity (3 submissions)
Last evaluated:: Mar 31, 2022
Review status:: criteria provided, conflicting classifications

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000711551.14

Allele description [Variation Report for NM_001130987.2(DYSF):c.225G>A (p.Thr75=)]

NM_001130987.2(DYSF):c.225G>A (p.Thr75=)

Gene:

DYSF:dysferlin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p13.2

Genomic location:

Preferred name:

NM_001130987.2(DYSF):c.225G>A (p.Thr75=)

HGVS:

NC_000002.12:g.71481956G>A
NG_008694.1:g.33334G>A
NM_001130455.2:c.225G>A
NM_001130976.2:c.222G>A
NM_001130977.2:c.222G>A
NM_001130978.2:c.222G>A
NM_001130979.2:c.222G>A
NM_001130980.2:c.222G>A
NM_001130981.2:c.222G>A
NM_001130982.2:c.225G>A
NM_001130983.2:c.225G>A
NM_001130984.2:c.225G>A
NM_001130985.2:c.225G>A
NM_001130986.2:c.225G>A
NM_001130987.2:c.225G>AMANE SELECT
NM_003494.4:c.222G>A
NP_001123927.1:p.Thr75=
NP_001124448.1:p.Thr74=
NP_001124449.1:p.Thr74=
NP_001124450.1:p.Thr74=
NP_001124451.1:p.Thr74=
NP_001124452.1:p.Thr74=
NP_001124453.1:p.Thr74=
NP_001124454.1:p.Thr75=
NP_001124455.1:p.Thr75=
NP_001124456.1:p.Thr75=
NP_001124457.1:p.Thr75=
NP_001124458.1:p.Thr75=
NP_001124459.1:p.Thr75=
NP_003485.1:p.Thr74=
LRG_845t1:c.222G>A
LRG_845t2:c.225G>A
LRG_845:g.33334G>A
LRG_845p1:p.Thr74=
LRG_845p2:p.Thr75=
NC_000002.11:g.71709086G>A
NM_003494.3:c.222G>A

Links:

dbSNP: rs200957354

NCBI 1000 Genomes Browser:

rs200957354

Molecular consequence:

NM_001130455.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130976.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130977.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130978.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130979.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130980.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130981.2:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130982.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130983.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130984.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130985.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130986.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001130987.2:c.225G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_003494.4:c.222G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000705724	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL Classification Definitions 2015)	Uncertain significance (Jan 20, 2017)	germline	clinical testing	Citation Link,
SCV000841930	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics Criteria)	Benign (Dec 30, 2017)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV003830868	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 31, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000705724

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL Classification Definitions 2015)

Uncertain significance
(Jan 20, 2017)

germline

clinical testing

Citation Link,

SCV000841930

Athena Diagnostics

criteria provided, single submitter

(Athena Diagnostics Criteria)

Benign
(Dec 30, 2017)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV003830868

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 31, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Eurofins Ntd Llc (ga), SCV000705724.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		1	not provided	not provided	not provided

From Athena Diagnostics, SCV000841930.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Revvity Omics, Revvity, SCV003830868.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine