NM_002617.4(PEX10):c.418G>C (p.Gly140Arg) AND not provided

Germline classification:: Uncertain significance (3 submissions)
Last evaluated:: Feb 9, 2023
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000676044.10

Allele description [Variation Report for NM_002617.4(PEX10):c.418G>C (p.Gly140Arg)]

NM_002617.4(PEX10):c.418G>C (p.Gly140Arg)

Gene:

PEX10:peroxisomal biogenesis factor 10 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.32

Genomic location:

Preferred name:

NM_002617.4(PEX10):c.418G>C (p.Gly140Arg)

Other names:

p.Gly140Arg

HGVS:

NC_000001.11:g.2408634C>G
NG_008342.1:g.8938G>C
NM_001374425.1:c.418G>C
NM_001374426.1:c.-15G>C
NM_001374427.1:c.-15G>C
NM_002617.4:c.418G>CMANE SELECT
NM_153818.2:c.418G>C
NP_001361354.1:p.Gly140Arg
NP_002608.1:p.Gly140Arg
NP_722540.1:p.Gly140Arg
NP_722540.1:p.Gly140Arg
NC_000001.10:g.2340073C>G
NM_153818.1:c.418G>C
NR_164636.1:n.537G>C

Protein change:

G140R

Links:

dbSNP: rs76530653

NCBI 1000 Genomes Browser:

rs76530653

Molecular consequence:

NM_001374426.1:c.-15G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001374427.1:c.-15G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001374425.1:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_002617.4:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_153818.2:c.418G>C - missense variant - [Sequence Ontology: SO:0001583]
NR_164636.1:n.537G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000705535	Eurofins Ntd Llc (ga)	criteria provided, single submitter (EGL ClinVar v180209 classification definitions)	Uncertain significance (Jun 29, 2018)	germline	clinical testing	Citation Link,
SCV000801778	Mayo Clinic Laboratories, Mayo Clinic	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Feb 9, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV005186759	Breakthrough Genomics, Breakthrough Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance	germline	not provided	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000705535

Eurofins Ntd Llc (ga)

criteria provided, single submitter

(EGL ClinVar v180209 classification definitions)

Uncertain significance
(Jun 29, 2018)

germline

clinical testing

Citation Link,

SCV000801778

Mayo Clinic Laboratories, Mayo Clinic

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Feb 9, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005186759

Breakthrough Genomics, Breakthrough Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance

germline

not provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	not provided
not provided	germline	unknown	62	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Eurofins Ntd Llc (ga), SCV000705535.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	10	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		10	not provided	not provided	not provided

From Mayo Clinic Laboratories, Mayo Clinic, SCV000801778.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	52	not provided	not provided	clinical testing	PubMed (1)

Description

BP4

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		52	not provided	not provided	not provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005186759.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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