NM_015346.4(ZFYVE26):c.6006dup (p.Asp2003Ter) AND Hereditary spastic paraplegia 15

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Jun 28, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000667979.1

Allele description [Variation Report for NM_015346.4(ZFYVE26):c.6006dup (p.Asp2003Ter)]

NM_015346.4(ZFYVE26):c.6006dup (p.Asp2003Ter)

Gene:

ZFYVE26:zinc finger FYVE-type containing 26 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

14q24.1

Genomic location:

Preferred name:

NM_015346.4(ZFYVE26):c.6006dup (p.Asp2003Ter)

HGVS:

NC_000014.9:g.67766232dup
NG_011836.1:g.55358dup
NM_015346.4:c.6006dupMANE SELECT
NP_056161.2:p.Asp2003Ter
NC_000014.8:g.68232949dup
NM_015346.3:c.6006dupT

Protein change:

D2003*

Links:

dbSNP: rs1555394824

NCBI 1000 Genomes Browser:

rs1555394824

Molecular consequence:

NM_015346.4:c.6006dup - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Hereditary spastic paraplegia 15 (SPG15)
Synonyms:: SPASTIC PARAPLEGIA 15, AUTOSOMAL RECESSIVE; Spastic paraplegia 15; Spastic paraplegia and retinal degeneration; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010044; MedGen: C1849128; Orphanet: 100996; OMIM: 270700

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000792513	Counsyl	criteria provided, single submitter (Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))	Likely pathogenic (Jun 28, 2017)	unknown	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000792513

Counsyl

criteria provided, single submitter

(Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))

Likely pathogenic
(Jun 28, 2017)

unknown

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Counsyl, SCV000792513.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 23, 2022

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