NM_152618.3(BBS12):c.860AAG[1] (p.Glu288del) AND Bardet-Biedl syndrome 12

Germline classification:: Uncertain significance (3 submissions)
Last evaluated:: Mar 8, 2022
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000666763.4

Allele description [Variation Report for NM_152618.3(BBS12):c.860AAG[1] (p.Glu288del)]

NM_152618.3(BBS12):c.860AAG[1] (p.Glu288del)

Gene:

BBS12:Bardet-Biedl syndrome 12 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

4q27

Genomic location:

Preferred name:

NM_152618.3(BBS12):c.860AAG[1] (p.Glu288del)

HGVS:

NC_000004.12:g.122742752AAG[1]
NG_021203.1:g.15051AAG[1]
NM_001178007.2:c.860AAG[1]
NM_152618.3:c.860AAG[1]MANE SELECT
NP_001171478.1:p.Glu288del
NP_689831.2:p.Glu288del
NC_000004.11:g.123663905_123663907del
NC_000004.11:g.123663907AAG[1]
NM_152618.2:c.863_865del
NM_152618.2:c.863_865delAAG
NM_152618.3:c.863_865delMANE SELECT

Protein change:

E288del

Links:

dbSNP: rs745504524

NCBI 1000 Genomes Browser:

rs745504524

Molecular consequence:

NM_001178007.2:c.860AAG[1] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_152618.3:c.860AAG[1] - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Name:: Bardet-Biedl syndrome 12 (BBS12)
Identifiers:: MONDO: MONDO:0014440; MedGen: C1859570; Orphanet: 110; OMIM: 615989

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000791113	Counsyl	criteria provided, single submitter (Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))	Uncertain significance (Apr 28, 2017)	unknown	clinical testing	Citation Link,
SCV002082493	Natera, Inc.	no assertion criteria provided	Uncertain significance (Mar 9, 2021)	germline	clinical testing
SCV002776754	Fulgent Genetics, Fulgent Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 8, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000791113

Counsyl

criteria provided, single submitter

(Counsyl Autosomal Recessive and X-Linked Classification Criteria (2018))

Uncertain significance
(Apr 28, 2017)

unknown

clinical testing

Citation Link,

SCV002082493

Natera, Inc.

no assertion criteria provided

Uncertain significance
(Mar 9, 2021)

germline

clinical testing

SCV002776754

Fulgent Genetics, Fulgent Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 8, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Counsyl, SCV000791113.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Natera, Inc., SCV002082493.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Fulgent Genetics, Fulgent Genetics, SCV002776754.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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