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NM_018486.3(HDAC8):c.932C>T (p.Thr311Met) AND Inborn genetic diseases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 25, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000624803.2

Allele description [Variation Report for NM_018486.3(HDAC8):c.932C>T (p.Thr311Met)]

NM_018486.3(HDAC8):c.932C>T (p.Thr311Met)

Gene:
HDAC8:histone deacetylase 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_018486.3(HDAC8):c.932C>T (p.Thr311Met)
HGVS:
  • NC_000023.11:g.72462077G>A
  • NG_015851.1:g.116027C>T
  • NM_001166418.2:c.659C>T
  • NM_018486.3:c.932C>TMANE SELECT
  • NP_001159890.1:p.Thr220Met
  • NP_060956.1:p.Thr311Met
  • NC_000023.10:g.71681927G>A
  • NM_018486.2:c.932C>T
  • NR_051952.2:n.872C>T
  • Q9BY41:p.Thr311Met
  • c.932C>T(p.T311M)
Protein change:
T220M; THR311MET
Links:
UniProtKB: Q9BY41#VAR_069141; OMIM: 300269.0004; dbSNP: rs397515417
NCBI 1000 Genomes Browser:
rs397515417
Molecular consequence:
  • NM_001166418.2:c.659C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_018486.3:c.932C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_051952.2:n.872C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000740979Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Pathogenic
(Jun 25, 2015)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Hispanicgermlineyes1not providednot provided1not providedclinical testing
Unknowngermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Compromised structure and function of HDAC8 mutants identified in Cornelia de Lange Syndrome spectrum disorders.

Decroos C, Bowman CM, Moser JA, Christianson KE, Deardorff MA, Christianson DW.

ACS Chem Biol. 2014 Sep 19;9(9):2157-64. doi: 10.1021/cb5003762. Epub 2014 Jul 30.

PubMed [citation]
PMID:
25075551
PMCID:
PMC4168803

On the function of the internal cavity of histone deacetylase protein 8: R37 is a crucial residue for catalysis.

Haider S, Joseph CG, Neidle S, Fierke CA, Fuchter MJ.

Bioorg Med Chem Lett. 2011 Apr 1;21(7):2129-32. doi: 10.1016/j.bmcl.2011.01.128. Epub 2011 Feb 2.

PubMed [citation]
PMID:
21320778
PMCID:
PMC3286521

Details of each submission

From Ambry Genetics, SCV000740979.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Hispanic1not providednot providedclinical testing PubMed (2)
2Unknown1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided
2germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024