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NM_001304990.2(SPRY3):c.55C>T (p.Arg19Cys) AND Ependymoma

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 29, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000577858.1

Allele description [Variation Report for NM_001304990.2(SPRY3):c.55C>T (p.Arg19Cys)]

NM_001304990.2(SPRY3):c.55C>T (p.Arg19Cys)

Gene:
SPRY3:sprouty RTK signaling antagonist 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001304990.2(SPRY3):c.55C>T (p.Arg19Cys)
HGVS:
  • NC_000023.11:g.155773926C>T
  • NC_000024.10:g.56960446C>T
  • NM_001304990.2:c.55C>TMANE SELECT
  • NM_001394353.1:c.55C>T
  • NM_001394354.1:c.55C>T
  • NM_001394355.1:c.55C>T
  • NM_005840.4:c.55C>T
  • NP_001291919.1:p.Arg19Cys
  • NP_001381282.1:p.Arg19Cys
  • NP_001381283.1:p.Arg19Cys
  • NP_001381284.1:p.Arg19Cys
  • NP_005831.1:p.Arg19Cys
  • NC_000023.10:g.155003588C>T
  • NC_000024.9:g.59106594C>T
Protein change:
R19C
Links:
dbSNP: rs779201129
NCBI 1000 Genomes Browser:
rs779201129
Molecular consequence:
  • NM_001304990.2:c.55C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001394353.1:c.55C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001394354.1:c.55C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001394355.1:c.55C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005840.4:c.55C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Ependymoma
Synonyms:
Ependymoma, familial; Clear cell ependymoma (histologic variant); Papillary ependymoma (histologic variant); See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0016698; MeSH: D004806; MedGen: C0014474; Human Phenotype Ontology: HP:0002888

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000678448McDonnell Genome Institute, Washington University in St. Louis
no assertion criteria provided
Uncertain significance
(Dec 29, 2017)
somaticresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From McDonnell Genome Institute, Washington University in St. Louis, SCV000678448.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providedbrainnot providednot providednot providednot providednot provided

Last Updated: Mar 26, 2023