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NM_001346754.2(PIGW):c.106A>G (p.Arg36Gly) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
May 12, 2024
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000519253.16

Allele description [Variation Report for NM_001346754.2(PIGW):c.106A>G (p.Arg36Gly)]

NM_001346754.2(PIGW):c.106A>G (p.Arg36Gly)

Genes:
MYO19:myosin XIX [Gene - OMIM - HGNC]
PIGW:phosphatidylinositol glycan anchor biosynthesis class W [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q12
Genomic location:
Preferred name:
NM_001346754.2(PIGW):c.106A>G (p.Arg36Gly)
HGVS:
  • NC_000017.11:g.36537207A>G
  • NG_052004.1:g.7446A>G
  • NM_001346754.2:c.106A>GMANE SELECT
  • NM_001346755.2:c.106A>G
  • NM_178517.5:c.106A>G
  • NP_001333683.1:p.Arg36Gly
  • NP_001333684.1:p.Arg36Gly
  • NP_848612.2:p.Arg36Gly
  • NC_000017.10:g.34893056A>G
  • NM_001346754.1:c.106A>G
  • NM_178517.3:c.106A>G
Protein change:
R36G; ARG36GLY
Links:
OMIM: 610275.0004; dbSNP: rs142067039
NCBI 1000 Genomes Browser:
rs142067039
Molecular consequence:
  • NM_001346754.2:c.106A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346755.2:c.106A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_178517.5:c.106A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000621125GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(May 12, 2024) 		germlineclinical testing

Citation Link,

SCV004144487CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)		Likely benign
(Apr 1, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000621125.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 34426522, 32198969, 36740579, 30679815, 35788948, Savasan2023[casereport])

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004144487.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

PIGW: BP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024