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NM_001368809.2(AMPD2):c.488G>C (p.Arg163Pro) AND Hereditary spastic paraplegia

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 7, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000516002.2

Allele description [Variation Report for NM_001368809.2(AMPD2):c.488G>C (p.Arg163Pro)]

NM_001368809.2(AMPD2):c.488G>C (p.Arg163Pro)

Gene:
AMPD2:adenosine monophosphate deaminase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p13.3
Genomic location:
Preferred name:
NM_001368809.2(AMPD2):c.488G>C (p.Arg163Pro)
Other names:
p.Arg217Pro
HGVS:
  • NC_000001.11:g.109626384G>C
  • NG_034075.1:g.11572G>C
  • NM_001257360.1:c.650G>C
  • NM_001257361.2:c.296G>C
  • NM_001308170.1:c.425G>C
  • NM_001368809.2:c.488G>CMANE SELECT
  • NM_004037.9:c.488G>C
  • NM_139156.4:c.407G>C
  • NP_001244290.1:p.Arg99Pro
  • NP_001295099.1:p.Arg142Pro
  • NP_001355738.1:p.Arg163Pro
  • NP_004028.4:p.Arg163Pro
  • NP_631895.1:p.Arg136Pro
  • NC_000001.10:g.110169006G>C
  • NM_001368809.2:c.488G>C
Protein change:
R136P
Links:
dbSNP: rs138175138
NCBI 1000 Genomes Browser:
rs138175138
Molecular consequence:
  • NM_001257361.2:c.296G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001308170.1:c.425G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001368809.2:c.488G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004037.9:c.488G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139156.4:c.407G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary spastic paraplegia
Synonyms:
Familial spastic paraparesis
Identifiers:
MONDO: MONDO:0019064; MedGen: C0037773; OMIM: PS303350

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000574467Unit for Genetic & Epidemiological Research on Neurological Disorders, Instituto de Investigação e Inovação em Saúde
criteria provided, single submitter

(Morais et al. (Eur J Hum Genet. 2017))
Uncertain significance
(Mar 7, 2017)
unknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes22not providednot providednot providedresearch

Citations

PubMed

Massive sequencing of 70 genes reveals a myriad of missing genes or mechanisms to be uncovered in hereditary spastic paraplegias.

Morais S, Raymond L, Mairey M, Coutinho P, Brandão E, Ribeiro P, Loureiro JL, Sequeiros J, Brice A, Alonso I, Stevanin G.

Eur J Hum Genet. 2017 Nov;25(11):1217-1228. doi: 10.1038/ejhg.2017.124. Epub 2017 Aug 23.

PubMed [citation]
PMID:
28832565
PMCID:
PMC5643959

Details of each submission

From Unit for Genetic & Epidemiological Research on Neurological Disorders, Instituto de Investigação e Inovação em Saúde, SCV000574467.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot provided2not provided2not provided

Last Updated: Nov 24, 2024