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GRCh37/hg19 2p25.3-24.1(chr2:12770-20081474)x3 AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 15, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000510934.3

Allele description [Variation Report for GRCh37/hg19 2p25.3-24.1(chr2:12770-20081474)x3]

GRCh37/hg19 2p25.3-24.1(chr2:12770-20081474)x3

Genes:
  • NT5C1B:5'-nucleotidase, cytosolic IB [Gene - OMIM - HGNC]
  • ADAM17:ADAM metallopeptidase domain 17 [Gene - OMIM - HGNC]
  • ALKAL2:ALK and LTK ligand 2 [Gene - OMIM - HGNC]
  • ATP6V1C2:ATPase H+ transporting V1 subunit C2 [Gene - OMIM - HGNC]
  • ASAP2:ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Gene - OMIM - HGNC]
  • CYRIA:CYFIP related Rac1 interactor A [Gene - HGNC]
  • DDX1:DEAD-box helicase 1 [Gene - OMIM - HGNC]
  • E2F6:E2F transcription factor 6 [Gene - OMIM - HGNC]
  • EIPR1:EARP complex and GARP complex interacting protein 1 [Gene - OMIM - HGNC]
  • GEN1:GEN1 Holliday junction 5' flap endonuclease [Gene - OMIM - HGNC]
  • KLF11:KLF transcription factor 11 [Gene - OMIM - HGNC]
  • LRATD1:LRAT domain containing 1 [Gene - OMIM - HGNC]
  • MYCNOS:MYCN opposite strand [Gene - OMIM - HGNC]
  • MYCN:MYCN proto-oncogene, bHLH transcription factor [Gene - OMIM - HGNC]
  • NBAS:NBAS subunit of NRZ tethering complex [Gene - OMIM - HGNC]
  • NT5C1B-RDH14:NT5C1B-RDH14 readthrough [Gene - HGNC]
  • RAD51AP2:RAD51 associated protein 2 [Gene - HGNC]
  • ROCK2:Rho associated coiled-coil containing protein kinase 2 [Gene - OMIM - HGNC]
  • SH3YL1:SH3 and SYLF domain containing 1 [Gene - OMIM - HGNC]
  • SOX11:SRY-box transcription factor 11 [Gene - OMIM - HGNC]
  • TAF1B:TATA-box binding protein associated factor, RNA polymerase I subunit B [Gene - OMIM - HGNC]
  • ACP1:acid phosphatase 1 [Gene - OMIM - HGNC]
  • ADI1:acireductone dioxygenase 1 [Gene - OMIM - HGNC]
  • ALLC:allantoicase [Gene - OMIM - HGNC]
  • C2orf48:chromosome 2 open reading frame 48 [Gene - HGNC]
  • C2orf50:chromosome 2 open reading frame 50 [Gene - HGNC]
  • CPSF3:cleavage and polyadenylation specific factor 3 [Gene - OMIM - HGNC]
  • COLEC11:collectin subfamily member 11 [Gene - OMIM - HGNC]
  • CYS1:cystin 1 [Gene - OMIM - HGNC]
  • CMPK2:cytidine/uridine monophosphate kinase 2 [Gene - OMIM - HGNC]
  • DCDC2C:doublecortin domain containing 2C [Gene - HGNC]
  • FAM110C:family with sequence similarity 110 member C [Gene - OMIM - HGNC]
  • GRHL1:grainyhead like transcription factor 1 [Gene - OMIM - HGNC]
  • GREB1:growth regulating estrogen receptor binding 1 [Gene - OMIM - HGNC]
  • HPCAL1:hippocalcin like 1 [Gene - OMIM - HGNC]
  • ID2:inhibitor of DNA binding 2 [Gene - OMIM - HGNC]
  • ITGB1BP1:integrin subunit beta 1 binding protein 1 [Gene - OMIM - HGNC]
  • IAH1:isoamyl acetate hydrolyzing esterase 1 (putative) [Gene - HGNC]
  • KIDINS220:kinase D interacting substrate 220 [Gene - OMIM - HGNC]
  • LPIN1:lipin 1 [Gene - OMIM - HGNC]
  • LINC00570:long intergenic non-protein coding RNA 570 [Gene - HGNC]
  • MBOAT2:membrane bound O-acyltransferase domain containing 2 [Gene - OMIM - HGNC]
  • MSGN1:mesogenin 1 [Gene - OMIM - HGNC]
  • MYT1L:myelin transcription factor 1 like [Gene - OMIM - HGNC]
  • NTSR2:neurotensin receptor 2 [Gene - OMIM - HGNC]
  • NOL10:nucleolar protein 10 [Gene - OMIM - HGNC]
  • OSR1:odd-skipped related transcription factor 1 [Gene - OMIM - HGNC]
  • ODC1:ornithine decarboxylase 1 [Gene - OMIM - HGNC]
  • PXDN:peroxidasin [Gene - OMIM - HGNC]
  • KCNF1:potassium voltage-gated channel modifier subfamily F member 1 [Gene - OMIM - HGNC]
  • KCNS3:potassium voltage-gated channel modifier subfamily S member 3 [Gene - OMIM - HGNC]
  • PDIA6:protein disulfide isomerase family A member 6 [Gene - OMIM - HGNC]
  • RSAD2:radical S-adenosyl methionine domain containing 2 [Gene - OMIM - HGNC]
  • RDH14:retinol dehydrogenase 14 [Gene - OMIM - HGNC]
  • RNASEH1:ribonuclease H1 [Gene - OMIM - HGNC]
  • RRM2:ribonucleotide reductase regulatory subunit M2 [Gene - OMIM - HGNC]
  • RPS7:ribosomal protein S7 [Gene - OMIM - HGNC]
  • RNF144A:ring finger protein 144A [Gene - OMIM - HGNC]
  • SLC66A3:solute carrier family 66 member 3 [Gene - HGNC]
  • SMC6:structural maintenance of chromosomes 6 [Gene - OMIM - HGNC]
  • SNTG2:syntrophin gamma 2 [Gene - OMIM - HGNC]
  • TPO:thyroid peroxidase [Gene - OMIM - HGNC]
  • TRAPPC12:trafficking protein particle complex subunit 12 [Gene - OMIM - HGNC]
  • TMEM18:transmembrane protein 18 [Gene - OMIM - HGNC]
  • TRIB2:tribbles pseudokinase 2 [Gene - OMIM - HGNC]
  • YWHAQ:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Gene - OMIM - HGNC]
  • VSNL1:visinin like 1 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2p25.3-24.1
Genomic location:
Chr2: 12770 - 20081474 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2p25.3-24.1(chr2:12770-20081474)x3
HGVS:
    Links:
    dbVar: nssv14082194; dbVar: nsv3109819
    Observations:
    1

    Condition(s)

    Name:
    See cases [See the Variation display for details]
    Identifiers:

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000586353ISCA site 1

    See additional submitters

    no assertion criteria provided
    Pathogenic
    (Aug 15, 2014)
    de novoclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedde novoyes1not providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

    Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

    Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

    PubMed [citation]
    PMID:
    20466091
    PMCID:
    PMC2869000

    Details of each submission

    From ISCA site 1, SCV000586353.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1de novoyesnot providednot providedDiscovery1not providednot providednot provided

    Last Updated: May 7, 2024