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NM_000304.4(PMP22):c.215C>T (p.Ser72Leu) AND not provided

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Feb 8, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000489163.11

Allele description [Variation Report for NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)]

NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)

Gene:
PMP22:peripheral myelin protein 22 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p12
Genomic location:
Preferred name:
NM_000304.4(PMP22):c.215C>T (p.Ser72Leu)
HGVS:
  • NC_000017.11:g.15239575G>A
  • NG_007949.1:g.30753C>T
  • NM_000304.4:c.215C>TMANE SELECT
  • NM_001281455.2:c.215C>T
  • NM_001281456.2:c.215C>T
  • NM_001330143.2:c.215C>T
  • NM_153321.3:c.215C>T
  • NM_153322.3:c.215C>T
  • NP_000295.1:p.Ser72Leu
  • NP_001268384.1:p.Ser72Leu
  • NP_001268385.1:p.Ser72Leu
  • NP_001317072.1:p.Ser72Leu
  • NP_696996.1:p.Ser72Leu
  • NP_696997.1:p.Ser72Leu
  • LRG_263t1:c.215C>T
  • LRG_263:g.30753C>T
  • NC_000017.10:g.15142892G>A
  • NM_000304.2:c.215C>T
  • NM_000304.3:c.215C>T
  • NR_104017.2:n.310C>T
  • NR_104018.2:n.210C>T
  • Q01453:p.Ser72Leu
Protein change:
S72L; SER72LEU
Links:
UniProtKB: Q01453#VAR_006363; OMIM: 601097.0007; dbSNP: rs104894621
NCBI 1000 Genomes Browser:
rs104894621
Molecular consequence:
  • NM_000304.4:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281455.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281456.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330143.2:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153321.3:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153322.3:c.215C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104017.2:n.310C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104018.2:n.210C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000230064Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Pathogenic
(Dec 5, 2014)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link,

SCV000577163GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Feb 8, 2022)
germlineclinical testing

Citation Link,

SCV002018871Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Aug 28, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Infantile demyelinating neuropathy associated with a de novo point mutation on Ser72 in PMP22 and basal lamina onion bulbs in skin biopsy.

Ceuterick-de Groote C, De Jonghe P, Timmerman V, Van Goethem G, Löfgren A, Ceulemans B, Van Broeckhoven C, Martin JJ.

Pathol Res Pract. 2001;197(3):193-8.

PubMed [citation]
PMID:
11314784

Dejerine-Sottas' neuropathy caused by the missense mutation PMP22 Ser72Leu.

Marques W Jr, Neto JM, Barreira AA.

Acta Neurol Scand. 2004 Sep;110(3):196-9.

PubMed [citation]
PMID:
15285778
See all PubMed Citations (4)

Details of each submission

From Eurofins Ntd Llc (ga), SCV000230064.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV000577163.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; This variant is associated with the following publications: (PMID: 10399754, 11314784, 9888385, 15285778, 8275092, 21840889, 19748054, 19705173, 31130284, 32005694)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV002018871.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024