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NM_003042.4(SLC6A1):c.1531G>A (p.Val511Met) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Sep 12, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000485887.4

Allele description [Variation Report for NM_003042.4(SLC6A1):c.1531G>A (p.Val511Met)]

NM_003042.4(SLC6A1):c.1531G>A (p.Val511Met)

Gene:
SLC6A1:solute carrier family 6 member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_003042.4(SLC6A1):c.1531G>A (p.Val511Met)
HGVS:
  • NC_000003.12:g.11034534G>A
  • NG_053003.1:g.46806G>A
  • NM_001348250.2:c.1531G>A
  • NM_001348251.2:c.1171G>A
  • NM_001348252.2:c.997G>A
  • NM_001348253.2:c.997G>A
  • NM_003042.4:c.1531G>AMANE SELECT
  • NP_001335179.1:p.Val511Met
  • NP_001335180.1:p.Val391Met
  • NP_001335181.1:p.Val333Met
  • NP_001335182.1:p.Val333Met
  • NP_003033.3:p.Val511Met
  • NC_000003.11:g.11076220G>A
  • NM_003042.3:c.1531G>A
Protein change:
V333M
Links:
dbSNP: rs1064794981
NCBI 1000 Genomes Browser:
rs1064794981
Molecular consequence:
  • NM_001348250.2:c.1531G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348251.2:c.1171G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348252.2:c.997G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001348253.2:c.997G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003042.4:c.1531G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000570338GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Sep 12, 2023)
germlineclinical testing

Citation Link,

SCV004031301Molecular Genetics laboratory, Necker Hospital
no assertion criteria provided
Pathogenic
(Jun 14, 2022)
unknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000570338.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Published functional studies demonstrate a damaging effect (Mermer et al., 2021); Not observed at significant frequency in large population cohorts (gnomAD); This variant is associated with the following publications: (PMID: 29315614, 34028503, 34006619, 31440721, 31302675)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Molecular Genetics laboratory, Necker Hospital, SCV004031301.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024