NM_006888.6(CALM1):c.421+7_421+10del AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 3, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000483518.2

Allele description [Variation Report for NM_006888.6(CALM1):c.421+7_421+10del]

NM_006888.6(CALM1):c.421+7_421+10del

Genes:

LOC126862021:CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:90870785-90871984 [Gene]
CALM1:calmodulin 1 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

14q32.11

Genomic location:

Preferred name:

NM_006888.6(CALM1):c.421+7_421+10del

HGVS:

NC_000014.9:g.90404521_90404524del
NG_013338.1:g.12539_12542del
NM_001363669.2:c.313+7_313+10del
NM_001363670.2:c.424+7_424+10del
NM_006888.6:c.421+7_421+10delMANE SELECT
NC_000014.8:g.90870863_90870866del
NC_000014.8:g.90870865_90870868del
NM_006888.4:c.421+7_421+10delCTAA

Links:

dbSNP: rs771894805

NCBI 1000 Genomes Browser:

rs771894805

Molecular consequence:

NM_001363669.2:c.313+7_313+10del - intron variant - [Sequence Ontology: SO:0001627]
NM_001363670.2:c.424+7_424+10del - intron variant - [Sequence Ontology: SO:0001627]
NM_006888.6:c.421+7_421+10del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000572633	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Likely benign (Nov 3, 2017)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000572633

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification (06012015))

Likely benign
(Nov 3, 2017)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000572633.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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