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NM_000423.3(KRT2):c.536G>A (p.Arg179His) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 5, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000434387.1

Allele description [Variation Report for NM_000423.3(KRT2):c.536G>A (p.Arg179His)]

NM_000423.3(KRT2):c.536G>A (p.Arg179His)

Gene:
KRT2:keratin 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.13
Genomic location:
Preferred name:
NM_000423.3(KRT2):c.536G>A (p.Arg179His)
HGVS:
  • NC_000012.12:g.52651607C>T
  • NG_008296.1:g.5569G>A
  • NM_000423.3:c.536G>AMANE SELECT
  • NP_000414.2:p.Arg179His
  • NC_000012.11:g.53045391C>T
  • NM_000423.2:c.536G>A
Protein change:
R179H
Links:
dbSNP: rs202243677
NCBI 1000 Genomes Browser:
rs202243677
Molecular consequence:
  • NM_000423.3:c.536G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000535972GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Jan 5, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000535972.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The R179H variant in the KRT5 gene has not been reported previously as a pathogenic variant, nor as a benign variant, to our knowledge. It was observed at low frequency in approximately 6,500 individuals of European and African American ancestry by the NHLBI Exome Sequencing Project and also in a GeneDx cohort of controls. This substitution occurs within a known mutational hotspot region (helix initiation motif) that is highly conserved across all species and among all members of the keratin family. Many other pathogenic variants in patients with epidermolysis bullosa simplex have been reported in nearby residues (E178K, Q181P I182N) according to the Human Gene Mutation Database (Stenson et al., 2014). However, this missense change occurs at a nucleotide position that is not conserved and in silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. Therefore, we interpret R179H as a variant of uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023