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NM_033066.3(MPP4):c.946T>C (p.Trp316Arg) AND multiple conditions

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000416477.2

Allele description [Variation Report for NM_033066.3(MPP4):c.946T>C (p.Trp316Arg)]

NM_033066.3(MPP4):c.946T>C (p.Trp316Arg)

Gene:
MPP4:MAGUK p55 scaffold protein 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q33.1
Genomic location:
Preferred name:
NM_033066.3(MPP4):c.946T>C (p.Trp316Arg)
HGVS:
  • NC_000002.12:g.201675255A>G
  • NG_012654.1:g.28440T>C
  • NM_033066.3:c.946T>CMANE SELECT
  • NP_149055.2:p.Trp316Arg
  • NC_000002.11:g.202539978A>G
  • NM_033066.2:c.946T>C
Protein change:
W316R
Links:
dbSNP: rs1057519443
NCBI 1000 Genomes Browser:
rs1057519443
Molecular consequence:
  • NM_033066.3:c.946T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Global developmental delay (DD)
Identifiers:
MedGen: C0557874; Human Phenotype Ontology: HP:0001263
Name:
Seizure
Synonyms:
Seizures
Identifiers:
MedGen: C0036572; Human Phenotype Ontology: HP:0001250
Name:
High palate
Identifiers:
MedGen: C0240635; Human Phenotype Ontology: HP:0000218
Name:
Wide nasal bridge
Identifiers:
MedGen: C1849367; Human Phenotype Ontology: HP:0000431
Name:
Strabismus
Identifiers:
MONDO: MONDO:0003432; MedGen: C0038379; Human Phenotype Ontology: HP:0000486
Name:
Intellectual disability
Synonyms:
Intellectual functioning disability; intellectual disabilities; Intellectual developmental disorder
Identifiers:
MONDO: MONDO:0001071; MeSH: D008607; MedGen: C3714756; Human Phenotype Ontology: HP:0001249
Name:
Generalized hypotonia
Identifiers:
MedGen: C1858120; Human Phenotype Ontology: HP:0001290

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000494169Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine
no assertion criteria provided
Pathogenicde novoresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine, SCV000494169.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided

Description

This variant was identified in an individual with developmental delay, seizures, high arched palate, broad nasal bridge, strabismus, hypotonia.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024