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NM_006846.4(SPINK5):c.891C>T (p.Cys297=) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 13, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000415446.2

Allele description [Variation Report for NM_006846.4(SPINK5):c.891C>T (p.Cys297=)]

NM_006846.4(SPINK5):c.891C>T (p.Cys297=)

Gene:
SPINK5:serine peptidase inhibitor Kazal type 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_006846.4(SPINK5):c.891C>T (p.Cys297=)
HGVS:
  • NC_000005.10:g.148097875C>T
  • NG_009633.1:g.38904C>T
  • NM_001127698.2:c.891C>T
  • NM_001127699.2:c.891C>T
  • NM_006846.4:c.891C>TMANE SELECT
  • NP_001121170.1:p.Cys297=
  • NP_001121171.1:p.Cys297=
  • NP_006837.2:p.Cys297=
  • NP_006837.2:p.Cys297=
  • LRG_110t1:c.891C>T
  • LRG_110:g.38904C>T
  • LRG_110p1:p.Cys297=
  • NC_000005.9:g.147477438C>T
  • NM_001127698.1:c.891C>T
  • NM_006846.3:c.891C>T
Links:
dbSNP: rs752941297
NCBI 1000 Genomes Browser:
rs752941297
Molecular consequence:
  • NM_001127698.2:c.891C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127699.2:c.891C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_006846.4:c.891C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Erythroderma
Synonyms:
Exfoliative dermatitis
Identifiers:
MONDO: MONDO:0043233; MedGen: C0011606; Human Phenotype Ontology: HP:0001019
Name:
Increased circulating IgE concentration
Synonyms:
Increased IgE level; Ige, elevated level of
Identifiers:
MedGen: C0236175; Human Phenotype Ontology: HP:0003212

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000492792Centre for Mendelian Genomics, University Medical Centre Ljubljana
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jul 13, 2015) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV000492792.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024