NM_000527.5(LDLR):c.2478dup (p.Val827fs) AND Hypercholesterolemia, familial, 1

Germline classification:: Pathogenic (2 submissions)
Last evaluated:: Mar 25, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000237430.2

Allele description [Variation Report for NM_000527.5(LDLR):c.2478dup (p.Val827fs)]

NM_000527.5(LDLR):c.2478dup (p.Val827fs)

Gene:

LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

19p13.2

Genomic location:

Preferred name:

NM_000527.5(LDLR):c.2478dup (p.Val827fs)

HGVS:

NC_000019.10:g.11129601dup
NG_009060.1:g.45221dup
NM_000527.5:c.2478dupMANE SELECT
NM_001195798.2:c.2478dup
NM_001195799.2:c.2355dup
NM_001195800.2:c.1974dup
NM_001195803.2:c.1944dup
NP_000518.1:p.Val827fs
NP_000518.1:p.Val827fs
NP_001182727.1:p.Val827fs
NP_001182728.1:p.Val786fs
NP_001182729.1:p.Val659fs
NP_001182732.1:p.Val649fs
LRG_274t1:c.2478dup
LRG_274:g.45221dup
LRG_274p1:p.Val827fs
NC_000019.9:g.11240277dup
NM_000527.4:c.2478dup
c.2478dupC

Protein change:

V649fs

Links:

LDLR-LOVD, British Heart Foundation: LDLR_000812; dbSNP: rs747344293

NCBI 1000 Genomes Browser:

rs747344293

Molecular consequence:

NM_000527.5:c.2478dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001195798.2:c.2478dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001195799.2:c.2355dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001195800.2:c.1974dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001195803.2:c.1944dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Hypercholesterolemia, familial, 1
Synonyms:: LDL RECEPTOR DISORDER; Hyperlipoproteinemia Type IIa; HYPER-LOW-DENSITY-LIPOPROTEINEMIA; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0007750; MedGen: C0745103; Orphanet: 391665; OMIM: 143890

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000296019	LDLR-LOVD, British Heart Foundation	criteria provided, single submitter (ACGS Guidelines, 2013)	Pathogenic (Mar 25, 2016)	germline	literature only	PubMed (1) [See all records that cite this PMID] Citation Link,
SCV000606660	Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum	no assertion criteria provided	Pathogenic	germline	research

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000296019

LDLR-LOVD, British Heart Foundation

criteria provided, single submitter

(ACGS Guidelines, 2013)

Pathogenic
(Mar 25, 2016)

germline

literature only

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV000606660

Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum

no assertion criteria provided

Pathogenic

germline

research

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	1	not provided	not provided	1	not provided	literature only
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

The molecular basis of familial hypercholesterolemia in The Netherlands.

Fouchier SW, Defesche JC, Umans-Eckenhausen MW, Kastelein JP.

Hum Genet. 2001 Dec;109(6):602-15. Epub 2001 Nov 9.

PubMed [citation]

PMID:: 11810272

Details of each submission

From LDLR-LOVD, British Heart Foundation, SCV000296019.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	literature only	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	1	not provided	not provided		1	not provided	not provided	not provided

From Laboratorium voor Moleculaire Diagnostiek Experimentele Vasculaire Geneeskunde, Academisch Medisch Centrum, SCV000606660.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 5, 2023

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