NM_201384.3(PLEC):c.8012G>A (p.Arg2671Gln) AND not provided

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Sep 29, 2015
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000224341.6

Allele description [Variation Report for NM_201384.3(PLEC):c.8012G>A (p.Arg2671Gln)]

NM_201384.3(PLEC):c.8012G>A (p.Arg2671Gln)

Gene:

PLEC:plectin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q24.3

Genomic location:

Preferred name:

NM_201384.3(PLEC):c.8012G>A (p.Arg2671Gln)

HGVS:

NC_000008.11:g.143921809C>T
NG_012492.1:g.59937G>A
NM_000445.5:c.8093G>A
NM_201378.4:c.7970G>A
NM_201379.3:c.7946G>A
NM_201380.4:c.8423G>A
NM_201381.3:c.7916G>A
NM_201382.4:c.8012G>A
NM_201383.3:c.8024G>A
NM_201384.3:c.8012G>AMANE SELECT
NP_000436.2:p.Arg2698Gln
NP_958780.1:p.Arg2657Gln
NP_958781.1:p.Arg2649Gln
NP_958782.1:p.Arg2808Gln
NP_958783.1:p.Arg2639Gln
NP_958784.1:p.Arg2671Gln
NP_958785.1:p.Arg2675Gln
NP_958786.1:p.Arg2671Gln
NC_000008.10:g.144995977C>T
NM_000445.3:c.8093G>A
NM_000445.4:c.8093G>A
NM_201380.2:c.8423G>A

Protein change:

R2639Q

Links:

dbSNP: rs28526657

NCBI 1000 Genomes Browser:

rs28526657

Molecular consequence:

NM_000445.5:c.8093G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201378.4:c.7970G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201379.3:c.7946G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201380.4:c.8423G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201381.3:c.7916G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201382.4:c.8012G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201383.3:c.8024G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_201384.3:c.8012G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000281448	Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely Benign (Sep 29, 2015)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV005222302	Breakthrough Genomics, Breakthrough Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign	germline	not provided	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000281448

Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely Benign
(Sep 29, 2015)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005222302

Breakthrough Genomics, Breakthrough Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign

germline

not provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	not provided
not provided	germline	not provided	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000281448.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

Converted during submission to Likely benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		not provided	0.005942	not provided	not provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005222302.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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