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NM_000071.3(CBS):c.572C>T (p.Thr191Met) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Aug 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000195441.8

Allele description [Variation Report for NM_000071.3(CBS):c.572C>T (p.Thr191Met)]

NM_000071.3(CBS):c.572C>T (p.Thr191Met)

Gene:
CBS:cystathionine beta-synthase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.3
Genomic location:
Preferred name:
NM_000071.3(CBS):c.572C>T (p.Thr191Met)
Other names:
p.T191M:ACG>ATG
HGVS:
  • NC_000021.9:g.43065481G>A
  • NG_008938.1:g.15450C>T
  • NM_000071.3:c.572C>TMANE SELECT
  • NM_001178008.3:c.572C>T
  • NM_001178009.3:c.572C>T
  • NM_001320298.2:c.572C>T
  • NM_001321072.1:c.257C>T
  • NP_000062.1:p.Thr191Met
  • NP_000062.1:p.Thr191Met
  • NP_001171479.1:p.Thr191Met
  • NP_001171480.1:p.Thr191Met
  • NP_001307227.1:p.Thr191Met
  • NP_001308001.1:p.Thr86Met
  • LRG_777t1:c.572C>T
  • LRG_777:g.15450C>T
  • LRG_777p1:p.Thr191Met
  • NC_000021.8:g.44485591G>A
  • NM_000071.2:c.572C>T
  • P35520:p.Thr191Met
Protein change:
T191M; THR191MET
Links:
UniProtKB: P35520#VAR_008068; OMIM: 613381.0016; dbSNP: rs121964973
NCBI 1000 Genomes Browser:
rs121964973
Molecular consequence:
  • NM_000071.3:c.572C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001178008.3:c.572C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001178009.3:c.572C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320298.2:c.572C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321072.1:c.257C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000249685GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Pathogenic
(Oct 6, 2022)
germlineclinical testing

Citation Link,

SCV005331353CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Pathogenic
(Aug 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000249685.16

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Published functional studies demonstrate a damaging effect on protein activity and ability to form functional aggregates (Kraus JP et al., 1999; Mayfield JA et al., 2012; Hnzda A et al., 2012); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 16429402, 15993874, 1281560, 29352562, 33335839, 26667307, 10338090, 20506325, 22267502, 27681349, 31589614, 16479318, 22069143, 16470595)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV005331353.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

CBS: PP1:Strong, PM2, PM3, PS3:Moderate, PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Nov 24, 2024