NM_139058.3(ARX):c.441_464dup (p.Ala148_Ala155dup) AND X-linked lissencephaly with abnormal genitalia

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Oct 2, 2014
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000192670.8

Allele description [Variation Report for NM_139058.3(ARX):c.441_464dup (p.Ala148_Ala155dup)]

NM_139058.3(ARX):c.441_464dup (p.Ala148_Ala155dup)

Genes:

LOC109610631:aristaless related homeobox polyalanine expansion region [Gene]
ARX:aristaless related homeobox [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

Xp21.3

Genomic location:

Preferred name:

NM_139058.3(ARX):c.441_464dup (p.Ala148_Ala155dup)

HGVS:

NC_000023.11:g.25013543_25013566dup
NG_008281.1:g.7395_7418dup
NG_052655.1:g.114_137dup
NM_139058.3:c.441_464dupMANE SELECT
NP_620689.1:p.Ala148_Ala155dup
NC_000023.10:g.25031647_25031648insGCCGCGGCGGCCGCGGCCGCGGCT
NC_000023.10:g.25031660_25031683dup
NM_139058.2:c.441_464dupAGCCGCGGCCGCGGCCGCCGCGGC
NM_139058.3:c.441_464dup
p.Ala148_Ala155dup8

Links:

dbSNP: rs398124510

NCBI 1000 Genomes Browser:

rs398124510

Molecular consequence:

NM_139058.3:c.441_464dup - inframe_insertion - [Sequence Ontology: SO:0001821]

Condition(s)

Name:: X-linked lissencephaly with abnormal genitalia
Synonyms:: Lissencephaly 2, X-linked
Identifiers:: MONDO: MONDO:0010268; MedGen: C1846171; Orphanet: 452; OMIM: 300215

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000246565	Genetic Services Laboratory, University of Chicago	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Oct 2, 2014)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000246565

Genetic Services Laboratory, University of Chicago

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Oct 2, 2014)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000246565.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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