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NM_001035.3(RYR2):c.32T>C (p.Ile11Thr) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 30, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000182771.1

Allele description [Variation Report for NM_001035.3(RYR2):c.32T>C (p.Ile11Thr)]

NM_001035.3(RYR2):c.32T>C (p.Ile11Thr)

Gene:
RYR2:ryanodine receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q43
Genomic location:
Preferred name:
NM_001035.3(RYR2):c.32T>C (p.Ile11Thr)
Other names:
p.I11T:ATC>ACC
HGVS:
  • NC_000001.11:g.237042553T>C
  • NG_008799.3:g.5370T>C
  • NM_001035.3:c.32T>CMANE SELECT
  • NP_001026.2:p.Ile11Thr
  • LRG_402t1:c.32T>C
  • LRG_402:g.5370T>C
  • LRG_402p1:p.Ile11Thr
  • NC_000001.10:g.237205853T>C
  • NG_008799.2:g.5152T>C
  • NM_001035.2:c.32T>C
Protein change:
I11T
Links:
dbSNP: rs794728760
NCBI 1000 Genomes Browser:
rs794728760
Molecular consequence:
  • NM_001035.3:c.32T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000235157GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Oct 30, 2013)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000235157.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Ile11Thr (ATC>ACC): c.32 T>C in exon 1 of the RYR2 gene (NM_001035.2). The Ile11Thr variant in the RYR2 gene has not been reported as a disease-causing mutation or as a benign polymorphism to our knowledge. Ile11Thr results in a non-conservative amino acid substitution of a non-polar Isoleucine residue with a polar Threonine residue at a position that is conserved across species. The Ile11Thr variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. However, in silico analysis was inconsistent with regard to the effect this variant may have on the protein structure/function. In addition, no mutations affecting nearby residues have been reported in the RYR2 gene in association with CPVT, indicating this region of the protein may be tolerant of change. We cannot definitively determine if Ile11Thr is a disease-causing mutation or a rare benign variant. The variant is found in CPVT panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024